Faucicola osloensis: AXE82_03275
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Entry
AXE82_03275 CDS
T04294
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mos
Faucicola osloensis
Pathway
mos03030
DNA replication
mos03410
Base excision repair
mos03420
Nucleotide excision repair
mos03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AXE82_03275 (ligA)
03410 Base excision repair
AXE82_03275 (ligA)
03420 Nucleotide excision repair
AXE82_03275 (ligA)
03430 Mismatch repair
AXE82_03275 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mos03032
]
AXE82_03275 (ligA)
03400 DNA repair and recombination proteins [BR:
mos03400
]
AXE82_03275 (ligA)
Enzymes [BR:
mos01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AXE82_03275 (ligA)
DNA replication proteins [BR:
mos03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AXE82_03275 (ligA)
DNA repair and recombination proteins [BR:
mos03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AXE82_03275 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AXE82_03275 (ligA)
MMR (mismatch excision repair)
DNA ligase
AXE82_03275 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AXE82_03275 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
Vps27_GAT-like
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AME00909
UniProt:
A0A378QA05
LinkDB
All DBs
Position
complement(754170..756197)
Genome browser
AA seq
675 aa
AA seq
DB search
MIMNTAAITAQMRKLIAQLKQHNHAYYVLDNPLLEDSEYDQLRQELVALETAYPELVQSD
SPTNQVGDKPLPFFTQVTHQIPMLSLGNLFTFDDLQNFMRRVNDRLADHQQNPEYEVELK
LDGLAVSLLYQNGQLTQAVTRGDGQTGEDITQNVRTIRNLPLQLAIDIPRLEVRGEVLMP
KAGFAKLNRDAQAKGEKTFANPRNAAAGSLRQLDPNIAKSRPLAFYAYSVNQGLPAEITT
QSDALFWLQALGFSISDIKIVQTAEQLQAYYQSVIEQRSRLPFEIDGTVIKVNSLALQEQ
LGFLSREPRWATAYKFPAETVMTRLNAIEWQVGRTGQLTPVGKLEPVNVGGVTVSNVTLH
NIGEIQRLDIRAGDMVSVHRAGDVIPKVTRVWQDERPANAQVVSLPTHCPVCDSPVIMPE
GEALARCTGGLFCPAQQQEALIHFVSRKAMDIDGLGERWLINFFEQGIVKNVADIYTLNN
HRDALINLEKLGEKSVDNMLAAIEKSKDTTLPRFIFALGIGGVGETTAMNLAMQFGDLQP
LMAASIEALQKTPDVGEKTADSIFEFFRAEHNIEVINRLLQAGIHWQPVSQVPEGNQPLK
GQSWVITGTLEGMGRDEAKAKLQALGAKVSGSVSAKTTALLAGEKAGSKLANAEKLGVKV
VTEAQFTDLLNSYHA
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgattatgaacacagccgctattactgcgcaaatgcgcaaactcattgcacagctaaaa
caacataaccacgcttactacgtcctagataatccgctgttagaagatagcgaatacgac
caacttcgccaggaactggtggcattagaaaccgcgtatcctgaattggtacaaagcgac
agccctaccaaccaagtaggcgacaagccgttgccgttttttacccaagtcacccaccaa
atacctatgctgtcactgggtaatttatttacctttgacgatttacagaactttatgcga
cgggtcaatgaccgtttggcggaccatcagcaaaaccccgaatatgaagtcgagctcaaa
cttgacggacttgcggtttcattgttgtaccaaaacgggcagttgacccaagcggtcacg
cgcggcgatggtcaaacgggcgaagatattacccaaaacgtgcgtactattcgaaatctt
ccgctgcagttggcgattgatataccgcggctagaagtgcgtggcgaagtactcatgccc
aaagcggggtttgccaagctcaaccgggatgcccaagcgaaaggggagaaaacctttgcc
aatccgcgtaatgccgccgcagggagtttgcgccaacttgaccccaatatcgccaaaagt
cgtccgctggcgttttatgcctattccgttaatcaaggcttgcccgctgagattaccacc
caatccgatgcgcttttttggctacaagcgttgggctttagcatcagcgatatcaaaatc
gtgcaaacagccgagcagctacaagcgtattatcaatcagtgattgaacaacgcagtcgc
ttaccctttgaaattgatggcacggtgattaaggtcaatagtttagccttgcaagagcaa
ctgggctttttaagccgtgagccacgctgggcaactgcctataaattccctgccgaaact
gtgatgacccgcctaaatgcgattgaatggcaagtagggcgcacaggtcagttgacgccc
gtgggtaagcttgaacctgtcaatgtcggtggcgtcactgttagcaatgtgaccctgcat
aatatcggtgaaattcagcgtttagatattcgagcaggggacatggtcagcgtacaccgt
gccggtgatgtcattcccaaagttacgcgcgtctggcaagatgaacgccctgccaatgcc
caagtggtgagcctgccgacgcattgcccggtgtgtgattcacccgttatcatgccagaa
ggtgaagcgctggcacgatgcaccggtgggctattttgcccagcccagcaacaagaagca
ctgattcactttgtcagtcgtaaagcgatggatatcgacgggctcggtgagcgctggttg
attaacttttttgagcaaggtattgttaaaaatgtcgcagatatttatacgcttaacaat
caccgcgacgcgctcatcaaccttgaaaaattgggggaaaaatctgtcgacaatatgcta
gctgccattgaaaaaagtaaagatacgaccttaccgcggtttatctttgcgttgggtatt
ggtggcgtaggcgagaccacagcgatgaatttagccatgcaatttggcgacttgcagccg
ctcatggcagcgagtattgaagctttgcaaaaaacccccgatgtcggtgaaaaaaccgca
gactcgatttttgagttttttcgtgccgagcacaatatcgaagtcatcaatcgattatta
caagcgggcattcattggcagcctgtcagccaagtgcctgaaggcaatcaaccgcttaaa
ggtcaaagttgggtcattacaggcacgcttgaaggcatgggacgtgatgaagccaaagcc
aaactgcaagcattaggggcaaaagtctcaggcagtgtttctgccaagaccaccgcactg
ctcgcaggcgaaaaagcgggcagtaaacttgccaatgccgaaaaactgggggtaaaagtg
gtcactgaagcgcaattcaccgatttattaaacagttatcatgcttaa
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integrated database retrieval system
