Mycobacterium ostraviense: LTS72_16665
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Entry
LTS72_16665 CDS
T07946
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mot
Mycobacterium ostraviense
Pathway
mot03030
DNA replication
mot03410
Base excision repair
mot03420
Nucleotide excision repair
mot03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LTS72_16665 (ligA)
03410 Base excision repair
LTS72_16665 (ligA)
03420 Nucleotide excision repair
LTS72_16665 (ligA)
03430 Mismatch repair
LTS72_16665 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mot03032
]
LTS72_16665 (ligA)
03400 DNA repair and recombination proteins [BR:
mot03400
]
LTS72_16665 (ligA)
Enzymes [BR:
mot01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LTS72_16665 (ligA)
DNA replication proteins [BR:
mot03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LTS72_16665 (ligA)
DNA repair and recombination proteins [BR:
mot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LTS72_16665 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LTS72_16665 (ligA)
MMR (mismatch excision repair)
DNA ligase
LTS72_16665 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LTS72_16665 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
HHH_3
Motif
Other DBs
NCBI-ProteinID:
UGT90019
LinkDB
All DBs
Position
complement(3704104..3706185)
Genome browser
AA seq
693 aa
AA seq
DB search
MSSSEADTTPPEVLHQWQELAEEVREHQFRYYVRDAPIITDAEFDELLRRLEALEEQYPE
LRTPDSPTQLVGGAGFATEFEPVDHLERMLSLDNAFSPEELGAWAARIHTEIGDAASYLT
ELKIDGVALSLVYQGGRLTRASTRGDGRTGEDVTLNARTIDDVPERLRAGDDYPIPDVLE
VRGEVFFRVADFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGH
TEGFRPATLHQAYLALQAWGLPVSEHTTLVNDMAGVQERIDYWGEHRHEVDHEIDGVVVK
VDEVALQRRLGATSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAG
STVAQATLHNASEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGSEREFVMPTTCPE
CGTALAPEKEGDADIRCPNSQRCPAQLRERVFYVASRSALDIEVLGYEAAVALLQAGVIT
SEGDLFALTENDLLRTELFRTKAGGLSANGKRLLANLDKAKAAPLWRVLVALSIRHVGPT
AARALATEFGTLDAIAAASAEQLAAVEGVGPTIAAAVAEWFTVDWHREIVDKWRAAGVRM
ADERDESVPRTLAGLTVVVTGSLTGFSRDEAKEAIVARGGKAAGSVSKKTSFVVAGDSPG
SKYDKAVELGVPILDEDGFRKLLAEGPPEAVPE
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
gtgagttcgtccgaagccgacaccacgccgcccgaggtgttgcatcagtggcaggagctg
gccgaggaggtccgcgaacaccagttccgctactacgtacgcgatgcgccgatcatcacc
gacgccgagttcgacgagttgctacgccggctggaagcgctcgaggaacagtatccggag
ctgcgcacacccgattcgcccacgcagctggtcggcggcgccggctttgcgacggagttc
gagccggttgaccacctggaaagaatgctcagcctcgacaacgctttcagtcccgaggaa
ctcggcgcctgggccgcccgcatccacaccgaaatcggtgacgctgccagctacctcact
gagctcaagatcgacggggtggcactgtcgctggtttaccaaggaggccgcctgacccgc
gcctccacccggggtgacggccgcaccggcgaggacgtcacgctgaacgcccgcaccatc
gacgacgtcccggaacggctgcgcgccggcgacgactacccgatacccgacgtcctcgaa
gtccgcggcgaggtgttcttccgggtcgccgatttccaggcgctcaacgccagcctggtc
gaggagggcaaggcgccgttcgccaacccccgcaacagcgcggctggctcgctgcgccag
aaggacccggccgtcacagcccggcggcggctgcggatgatctgtcacgggctgggccac
accgaaggattccgcccggccaccctgcaccaggcatacctggcgctgcaagcctggggg
ttgccggtgtccgagcacaccacgctggtcaacgacatggccggagtacaggagcgcatc
gactactggggtgagcaccgccacgaggtggaccacgaaatcgacggcgtggtggtcaaa
gtcgacgaggtggcgctgcagcgcaggctgggtgccacgtcgcgggccccgcgctgggcg
atcgcttacaagtacccacccgaggaggcgcagaccaagctactcgacattcgcgtcaac
gtcggtcgcaccgggcgggtcacgccgttcgcgttcatgacaccggtgaaggtcgccggg
tcaacggtcgcgcaggccacgttgcacaacgcttcggaggtcaaacgcaagggggtgctg
atcggcgacacggtggtgatccgcaaggccggcgacgtgatccccgaggtgctgggacca
gtggtcgacctgcgcgacgggtccgaacgcgaattcgtcatgcccacaacatgtcccgag
tgcggcaccgcgctggccccggagaaggagggcgacgccgacatccgctgccccaactcc
cagcgttgcccggcgcaactgcgggagcgggtgttttacgtcgccagccgcagtgcgctg
gatatcgaggtgctgggctacgaggcggccgtcgcgctgttgcaggccggcgtgatcacc
agcgagggcgacctgttcgcgctgaccgaaaatgatctgttgcgtaccgagctgttccgc
accaaggccggcgggttgtcggccaacggcaaacggctgctggccaacctcgacaaggcc
aaggccgcaccgctgtggcgagtgctggtggcgctgtcgatccgccatgtcgggccgacg
gcggctcgcgcgctggccaccgaattcggcacgctcgatgcgatcgctgcggcgtccgcc
gagcagttggccgccgtcgagggcgtgggaccaaccattgccgccgcggtcgcggaatgg
tttaccgtcgactggcatcgcgagatcgtcgataagtggcgggctgccggggtgcggatg
gccgacgagcgcgacgagagcgtgccgcgcacgctggccgggttgaccgtcgtggtcacc
ggctcgctcaccggcttttcccgcgacgaggccaaggaggcgatcgtcgcgcgcggcggc
aaagctgccggttcggtgtcgaagaagacgtcgttcgtcgtcgccggtgactcgccggga
tcgaaatacgacaaggccgtcgaactcggcgtgcccatcctcgacgaagacggctttcgc
aagctattggccgaaggccctcccgaagctgtaccggagtga
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