KEGG   Mycobacterium ostraviense: LTS72_16665
Entry
LTS72_16665       CDS       T07946                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
mot  Mycobacterium ostraviense
Pathway
mot03030  DNA replication
mot03410  Base excision repair
mot03420  Nucleotide excision repair
mot03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mot00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LTS72_16665 (ligA)
   03410 Base excision repair
    LTS72_16665 (ligA)
   03420 Nucleotide excision repair
    LTS72_16665 (ligA)
   03430 Mismatch repair
    LTS72_16665 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mot03032]
    LTS72_16665 (ligA)
   03400 DNA repair and recombination proteins [BR:mot03400]
    LTS72_16665 (ligA)
Enzymes [BR:mot01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     LTS72_16665 (ligA)
DNA replication proteins [BR:mot03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     LTS72_16665 (ligA)
DNA repair and recombination proteins [BR:mot03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     LTS72_16665 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LTS72_16665 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     LTS72_16665 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      LTS72_16665 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT Nlig-Ia HHH BRCT_2 HHH_3
Other DBs
NCBI-ProteinID: UGT90019
LinkDB
Position
complement(3704104..3706185)
AA seq 693 aa
MSSSEADTTPPEVLHQWQELAEEVREHQFRYYVRDAPIITDAEFDELLRRLEALEEQYPE
LRTPDSPTQLVGGAGFATEFEPVDHLERMLSLDNAFSPEELGAWAARIHTEIGDAASYLT
ELKIDGVALSLVYQGGRLTRASTRGDGRTGEDVTLNARTIDDVPERLRAGDDYPIPDVLE
VRGEVFFRVADFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGH
TEGFRPATLHQAYLALQAWGLPVSEHTTLVNDMAGVQERIDYWGEHRHEVDHEIDGVVVK
VDEVALQRRLGATSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAG
STVAQATLHNASEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGSEREFVMPTTCPE
CGTALAPEKEGDADIRCPNSQRCPAQLRERVFYVASRSALDIEVLGYEAAVALLQAGVIT
SEGDLFALTENDLLRTELFRTKAGGLSANGKRLLANLDKAKAAPLWRVLVALSIRHVGPT
AARALATEFGTLDAIAAASAEQLAAVEGVGPTIAAAVAEWFTVDWHREIVDKWRAAGVRM
ADERDESVPRTLAGLTVVVTGSLTGFSRDEAKEAIVARGGKAAGSVSKKTSFVVAGDSPG
SKYDKAVELGVPILDEDGFRKLLAEGPPEAVPE
NT seq 2082 nt   +upstreamnt  +downstreamnt
gtgagttcgtccgaagccgacaccacgccgcccgaggtgttgcatcagtggcaggagctg
gccgaggaggtccgcgaacaccagttccgctactacgtacgcgatgcgccgatcatcacc
gacgccgagttcgacgagttgctacgccggctggaagcgctcgaggaacagtatccggag
ctgcgcacacccgattcgcccacgcagctggtcggcggcgccggctttgcgacggagttc
gagccggttgaccacctggaaagaatgctcagcctcgacaacgctttcagtcccgaggaa
ctcggcgcctgggccgcccgcatccacaccgaaatcggtgacgctgccagctacctcact
gagctcaagatcgacggggtggcactgtcgctggtttaccaaggaggccgcctgacccgc
gcctccacccggggtgacggccgcaccggcgaggacgtcacgctgaacgcccgcaccatc
gacgacgtcccggaacggctgcgcgccggcgacgactacccgatacccgacgtcctcgaa
gtccgcggcgaggtgttcttccgggtcgccgatttccaggcgctcaacgccagcctggtc
gaggagggcaaggcgccgttcgccaacccccgcaacagcgcggctggctcgctgcgccag
aaggacccggccgtcacagcccggcggcggctgcggatgatctgtcacgggctgggccac
accgaaggattccgcccggccaccctgcaccaggcatacctggcgctgcaagcctggggg
ttgccggtgtccgagcacaccacgctggtcaacgacatggccggagtacaggagcgcatc
gactactggggtgagcaccgccacgaggtggaccacgaaatcgacggcgtggtggtcaaa
gtcgacgaggtggcgctgcagcgcaggctgggtgccacgtcgcgggccccgcgctgggcg
atcgcttacaagtacccacccgaggaggcgcagaccaagctactcgacattcgcgtcaac
gtcggtcgcaccgggcgggtcacgccgttcgcgttcatgacaccggtgaaggtcgccggg
tcaacggtcgcgcaggccacgttgcacaacgcttcggaggtcaaacgcaagggggtgctg
atcggcgacacggtggtgatccgcaaggccggcgacgtgatccccgaggtgctgggacca
gtggtcgacctgcgcgacgggtccgaacgcgaattcgtcatgcccacaacatgtcccgag
tgcggcaccgcgctggccccggagaaggagggcgacgccgacatccgctgccccaactcc
cagcgttgcccggcgcaactgcgggagcgggtgttttacgtcgccagccgcagtgcgctg
gatatcgaggtgctgggctacgaggcggccgtcgcgctgttgcaggccggcgtgatcacc
agcgagggcgacctgttcgcgctgaccgaaaatgatctgttgcgtaccgagctgttccgc
accaaggccggcgggttgtcggccaacggcaaacggctgctggccaacctcgacaaggcc
aaggccgcaccgctgtggcgagtgctggtggcgctgtcgatccgccatgtcgggccgacg
gcggctcgcgcgctggccaccgaattcggcacgctcgatgcgatcgctgcggcgtccgcc
gagcagttggccgccgtcgagggcgtgggaccaaccattgccgccgcggtcgcggaatgg
tttaccgtcgactggcatcgcgagatcgtcgataagtggcgggctgccggggtgcggatg
gccgacgagcgcgacgagagcgtgccgcgcacgctggccgggttgaccgtcgtggtcacc
ggctcgctcaccggcttttcccgcgacgaggccaaggaggcgatcgtcgcgcgcggcggc
aaagctgccggttcggtgtcgaagaagacgtcgttcgtcgtcgccggtgactcgccggga
tcgaaatacgacaaggccgtcgaactcggcgtgcccatcctcgacgaagacggctttcgc
aagctattggccgaaggccctcccgaagctgtaccggagtga

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