Moraxella sp. DOX410: RNZ41_03420
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Entry
RNZ41_03420 CDS
T10479
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mow Moraxella sp. DOX410
Pathway
mow03030
DNA replication
mow03410
Base excision repair
mow03420
Nucleotide excision repair
mow03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mow00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RNZ41_03420 (ligA)
03410 Base excision repair
RNZ41_03420 (ligA)
03420 Nucleotide excision repair
RNZ41_03420 (ligA)
03430 Mismatch repair
RNZ41_03420 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mow03032
]
RNZ41_03420 (ligA)
03400 DNA repair and recombination proteins [BR:
mow03400
]
RNZ41_03420 (ligA)
Enzymes [BR:
mow01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RNZ41_03420 (ligA)
DNA replication proteins [BR:
mow03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RNZ41_03420 (ligA)
DNA repair and recombination proteins [BR:
mow03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RNZ41_03420 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RNZ41_03420 (ligA)
MMR (mismatch excision repair)
DNA ligase
RNZ41_03420 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RNZ41_03420 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WNP28149
UniProt:
A0AA96KZK3
LinkDB
All DBs
Position
746262..748283
Genome browser
AA seq
673 aa
AA seq
DB search
MNTAAITAQMRKLITQLKQHNHAYYVLDNPLLEDSEYDQLRQELVALETAHPELVQSDSP
TNQVGDKPLPFFTQVTHQIPMLSLGNLFTFDDLQNFMRRVNDRLADNQQNPEYEVELKLD
GLAVSLLYQNGQFIQAVTRGDGQTGEDITQNVRTIRNLPLQLPIDIPRLEVRGEVLMPKA
GFARLNRDAQAKGEKTFANPRNAAAGSLRQLDPNIAKSRPLAFYAYSVNQGLPAEITTQS
DALFWLKALGFSISDIKIVQTAAQLQAYYLSVIEKRSRLPFEIDGTVIKVNSLALQEQLG
FLSREPRWATAYKFPAETVMTRLNAIEWQVGRTGQLTPVGKLEPVNVGGVTVSNVTLHNI
GEIQRLDIRAGDMVSVHRAGDVIPKVTRVWTDERPANAQVVSLPTHCPVCDSPVIMPEGE
ALARCTGGLFCPAQQQEALIHFVSRKAMDIDGLGERWLINFFEQGIVKNVADIYALNNHR
DALINLEKLGEKSVENMLAAIEKSKDTTLPRFIFALGIGGVGESTAMNLAMQFGDLQPLM
AASIEALQKTPDVGEKTADSIFEFFRAEHNIEVINRLLQAGIHWQPVSPVPEGNQPLKGQ
SWVITGTLEGMGRDEAKAKLQSLGAKVSGSVSAKTTALLAGEKAGSKLANAEKLGVKVVT
EAQFTDLLNSYHA
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgaatacagccgctattactgcgcaaatgcgcaaactcattacacagctaaaacaacat
aaccacgcttattatgttctagataatccgctgttggaagatagcgaatacgaccaactt
cgccaagaactggtggcactagaaaccgcccatcctgaattggtacaaagcgatagccct
accaaccaagtaggtgacaagccgttgccgttttttacccaagtcacccaccaaataccc
atgctgtcactgggtaatttatttacttttgatgatttacagaactttatgcgacgggtc
aatgatcgtttggcagacaatcagcaaaaccccgaatatgaagtcgagctcaaacttgac
gggcttgcggtttcactgttgtaccaaaacgggcaatttatccaagcggtcacgcgcggc
gatggtcaaacgggcgaagatattacccaaaatgtgcgtactattcgaaatctaccgctg
cagttgccgattgatataccgcgcttagaagtgcgcggcgaagtactcatgcccaaagca
gggtttgcaaggctcaaccgtgatgcccaagcaaaaggggagaaaacctttgccaatccg
cgtaacgctgccgcaggaagtttgcgccagcttgatcccaatatcgccaaaagtcgtccg
ctggcgttttatgcctattccgtcaatcaaggcttgcccgctgagattaccacccaatcc
gatgcgcttttttggctaaaagcgttgggctttagcattagcgatatcaaaatcgtgcaa
acagccgcgcaactacaagcgtattatctatcggtgattgaaaaacgcagtcgcttaccc
tttgaaattgatggcacggtgattaaggtcaatagtttagccttgcaagagcaattaggc
tttttaagccgtgagccacgttgggcaactgcgtataaattccctgccgaaactgtcatg
acccgcttaaatgcgattgaatggcaagtagggcgcacaggtcagttgacgcccgtgggc
aagcttgaacctgtcaatgtcggtggcgtcacggtgagcaatgtgaccctgcataatatc
ggtgaaattcagcgtttagatatccgagcaggggacatggtcagcgtacaccgtgccggt
gatgtcattcccaaagttacgcgcgtttggacggacgagcgccctgccaatgcccaagtg
gtgagcctgccgacgcattgcccggtgtgtgattcacccgttatcatgccagaaggtgaa
gcgctggcacgatgcaccggcgggctattttgcccagcccagcaacaagaagcactgatt
cattttgtcagtcgtaaagcgatggatatcgatgggctcggtgaacgctggttgattaac
ttttttgagcaaggtattgttaaaaatgtcgcagatatttatgcgcttaacaatcaccgc
gatgcgctcatcaaccttgaaaaattgggggaaaaatctgtcgaaaatatgctggctgcc
attgaaaaaagtaaagatacgaccttaccgcggtttatctttgccttgggtattggtggc
gtgggtgagagcacagcgatgaatttagccatgcaatttggcgacttgcagccgctcatg
gcagcgagtatcgaagccttacaaaaaacccccgatgtcggtgaaaaaaccgcagactcg
atttttgagttttttcgtgccgagcacaatatcgaagtcatcaatcgattattacaagcc
ggtattcattggcagcctgtcagcccagtgcctgaaggcaatcagccgcttaaaggtcaa
agttgggtcattacaggcacgcttgaaggcatgggacgtgatgaagccaaggccaaactg
caatcattaggggcaaaagtctcaggcagtgtttctgccaagaccaccgcactgctcgca
ggcgaaaaagcgggcagtaaacttgccaatgccgaaaaactgggggtaaaagtggtcact
gaagcgcaattcaccgatttattaaacagttatcatgcttaa
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