Candidatus Methylomirabilis oxygeniifera: DAMO_2134
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Entry
DAMO_2134 CDS
T02155
Symbol
ligA
Name
(GenBank) DNA ligase (Polydeoxyribonucleotide synthase [NAD+])
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mox
Candidatus Methylomirabilis oxygeniifera
Pathway
mox03030
DNA replication
mox03410
Base excision repair
mox03420
Nucleotide excision repair
mox03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mox00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DAMO_2134 (ligA)
03410 Base excision repair
DAMO_2134 (ligA)
03420 Nucleotide excision repair
DAMO_2134 (ligA)
03430 Mismatch repair
DAMO_2134 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mox03032
]
DAMO_2134 (ligA)
03400 DNA repair and recombination proteins [BR:
mox03400
]
DAMO_2134 (ligA)
Enzymes [BR:
mox01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DAMO_2134 (ligA)
DNA replication proteins [BR:
mox03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DAMO_2134 (ligA)
DNA repair and recombination proteins [BR:
mox03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DAMO_2134 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DAMO_2134 (ligA)
MMR (mismatch excision repair)
DNA ligase
DAMO_2134 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DAMO_2134 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
Nlig-Ia
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
CBE69184
UniProt:
D5MHF2
LinkDB
All DBs
Position
complement(1845443..1847497)
Genome browser
AA seq
684 aa
AA seq
DB search
MSGISILRAQVDDLRQLIRRHEYLYYVLDRPEITDAEFDTLYQRLQTLETQHPELITPDS
PTQRVGGRPVEGFASVQHKAAMLSLDNAYNAEELREFEARIKRALPGERFTYVVEPKVDG
LSVALLYEGGRLVRGATRGDGRYGEDVTQNLMTVRGIPRYLHGPLAACAALEVRGEIFIW
RQAFEKLNRELEAEGEEPFANPRNAAAGSVRQKDPRITEVRRLDIFIYGVSYAEPDPFTE
HWQTMGQLLEAGFLLDPQDRKNTLERYRRRCADIDGVIQAYLEIEAARDEIGCDCDGVVV
KVDAIEQQRRLGSTTHHPRWAVAYKFPARQATSIIRKIDVNVGRTGALTPTALLDPVEIA
GATISRATLHNADEIERLDIREGDTVLIERAGDVIPHILRVIQEKRPPDSTPFCFPGQCP
VCNAQAFRPEGEVVSRCTNSACLARLKESLLHFGARRAMDIEHLGEAVVEQLVDRKLVRE
LADLYRLDVATLAELERLAQKSATNLHNAIQGSKGRGLSRLLFALGIRYVGEHVATILAR
HYGSMDRLEQAPEEELAEIFGIGPRIAQSVALYFRQPENRRQIEQLREVGVSMKEAGVTA
EPRPLAGKTFVLTGGLEGLTRDEAKELIVRVGGRVTSTVSKKTDFVVVGKDPGSKFDDAK
RLGVPTLDEVAFKELVSRGIESKK
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggtatttctatactccgcgcacaggttgatgatctccgacagctcattcgtcgc
catgaatatctgtattatgtgctggatcggccggagatcaccgatgccgagtttgatacg
ctctatcaacgcctgcaaacgcttgagacgcaacatcccgaactgattacgcccgattct
ccgacccaacgtgttggcggtcggcccgtcgaagggttcgcctcggtgcagcacaaggcg
gcgatgctctcgctggataatgcctacaatgccgaggaacttcgggagttcgaggcccgc
atcaagagggcgctcccaggcgagcggtttacttatgtggttgaaccgaaggttgatgga
ctgagcgtggccctgctgtatgagggcgggcggctggtgcggggcgccaccagaggggat
ggccgatacggcgaggatgtgacacagaatctgatgacggtcaggggtatcccccgttac
ctgcacggaccgctggccgcatgtgccgccctggaggtgcgcggcgagatcttcatatgg
cgtcaggcgtttgaaaagttgaatcgggagctggaggcggaaggcgaagagccattcgct
aatcccaggaacgccgcggccggctcagtccgccagaaagacccgcggatcaccgaagtc
cgtcgcctcgatatctttatttacggtgtcagctatgccgagcctgatccgtttaccgag
cattggcagaccatggggcagttgctggaggccggattccttctcgatcctcaagaccgc
aagaacacgctggaacgatatcgccgtcgttgcgccgatatcgatggagtcattcaggct
tatctcgagatcgaggccgcgcgagatgagatcgggtgcgactgcgacggcgttgtggtc
aaggtcgatgcgatcgagcagcaacggcggctcggctcgaccacccaccatcccaggtgg
gccgtcgcctataagttcccggcgcggcaggcgaccagtatcatcagaaagatcgacgtc
aacgtggggaggacgggggcgctgacgccgaccgccctgctcgatcccgtagagattgcc
ggcgctacgatcagcagggcgacgctgcacaatgctgatgagatcgagcgcctcgacatt
cgcgagggggacaccgtcctgatcgaacgagccggtgatgtgatcccgcacattttgcgg
gtgattcaagaaaagcggccccctgacagcacaccattttgctttcccggccaatgcccg
gtctgtaacgcccaggccttccgacccgagggcgaggtagtcagccgctgcaccaactct
gcctgcttagcccggctgaaagagtcgctgctgcacttcggcgcgagaagggcgatggac
atcgaacatctgggcgaggcggtagtggagcagcttgtcgatcggaaactggtcagggag
ctcgccgacctgtaccgacttgatgtggccaccctcgccgagcttgaacgactggcacag
aagtcggcgacgaatctgcataacgcaatccagggcagcaagggacgcggactgagtcgc
ctgttattcgcgctgggaatccgctatgtgggcgagcacgtcgccacaatcctggcccgg
cattacggctcgatggatcggctggagcaggcgccggaggaggagctggccgagattttt
ggtatcggtccccgcatcgcccagagtgtggcgctctattttcgtcagccggagaaccgc
cgccagatcgaacagttgcgtgaagtgggtgtcagcatgaaggaggcgggggtcacggcg
gagcctcgccccctggcgggcaaaaccttcgtcttgacgggcggactcgaagggctgact
cgcgacgaagccaaagagctgatcgtccgagttggtggccgcgtaacttcaacggtaagt
aagaagactgactttgttgtcgtcggcaaagaccccggcagcaagttcgacgacgccaag
cgcctcggcgtccccaccctcgacgaagttgcattcaaggaactggttagtcgaggaata
gaatcaaagaagtaa
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integrated database retrieval system
