Methylogaea oryzae: MoryE10_16380
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Entry
MoryE10_16380 CDS
T07433
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
moz
Methylogaea oryzae
Pathway
moz03030
DNA replication
moz03410
Base excision repair
moz03420
Nucleotide excision repair
moz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
moz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MoryE10_16380 (ligA)
03410 Base excision repair
MoryE10_16380 (ligA)
03420 Nucleotide excision repair
MoryE10_16380 (ligA)
03430 Mismatch repair
MoryE10_16380 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
moz03032
]
MoryE10_16380 (ligA)
03400 DNA repair and recombination proteins [BR:
moz03400
]
MoryE10_16380 (ligA)
Enzymes [BR:
moz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MoryE10_16380 (ligA)
DNA replication proteins [BR:
moz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MoryE10_16380 (ligA)
DNA repair and recombination proteins [BR:
moz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MoryE10_16380 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MoryE10_16380 (ligA)
MMR (mismatch excision repair)
DNA ligase
MoryE10_16380 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MoryE10_16380 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
BBL71032
UniProt:
A0A8D4VP01
LinkDB
All DBs
Position
1853679..1855694
Genome browser
AA seq
671 aa
AA seq
DB search
MSVPQDAADRAAALREQLDFHNRQYYQLDAPLISDAEYDALLRELQALEGRYPQLICPES
PTQRVGAAPLDAFAAVAHEVPMLSLDNAFDDEELAAFDRRLRERLGVDSVEYAAEPKLDG
LAVSLVYESGLLARAATRGDGYTGENITANVRTIRGIPLKLLGAGWPQRFEVRGEVFMPK
KGFEALNARAQQNGEKVFVNPRNAAAGSLRQLDPGVTASRPLRFYCYGHGVFPAEALPSR
HHELMELFGRWGLPVSPELRVVEGVEACHETYRRLQSKRPDLDYDIDGVVFKCNRFDWQE
LAGFVARAPRWAVARKFPAEEATTRVVAIDVQVGRTGALTPVARLEPVFVGGVTVTNATL
HNADEVQRKDVRVGDTVVVSRAGDVIPKVDRVLLEARPADAQPFVMPDRCPVCDSGVVAV
EGEAILRCGGGLYCPAQHKESVKHFASRRAMDIDGLGDKLVDQLLDQGRIKTVADLYLLA
VEDLASLERMGEKSAENLVRAIEKSKRTTLARFLYALGIREVGEATAQTLAGHFHTLDAL
MAADEAALQTAPDVGPAVAGQIVAFFAQAHNREVIAALRAAGVHWTEGVPEGVGERPLLG
QIFVLTGTLESMTRDEAKDKLLALGAKVAGSVSKKTNYVVAGSEAGSKLVKAEALGVEIL
SETAFLALLAR
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtcccccaggacgcggcggatcgcgccgcggcgttgcgcgagcaactcgatttc
cacaatcgccagtattatcaactcgacgcgccgctgatcagcgacgccgaatacgatgcc
ctgctgcgcgaactgcaagcgctggaagggcgatacccccagctgatttgccccgaatcc
cccacccagcgggtcggcgcggcgccgttggacgccttcgcggccgtggcccacgaagtg
ccgatgttgtcgttggacaacgctttcgacgacgaggaattggccgccttcgaccggcgg
ctgcgcgagcgtttgggcgtggatagcgtggaatacgccgctgagcccaagctggacggc
ctggcggtgagcctggtctacgagtccggcctgctggcgcgcgccgctacccgcggcgac
ggctacaccggcgagaacatcaccgccaacgtgcgcaccatccgcggcatacccctcaag
ctgctgggcgcgggctggccgcagcgcttcgaagtgcgcggcgaagtgttcatgccgaag
aagggcttcgaggccctcaacgcccgtgcccagcaaaacggcgaaaaggtgttcgtcaat
ccgcgcaatgccgccgccggcagcctgcgccagctcgaccccggcgtaacggccagccgc
cccctgcgcttttattgctacggccacggcgttttcccggccgaggctttgccttcccgt
caccacgagctgatggaactgttcggtcgttggggtttgcccgtatcgccggaattgcgg
gtggtggagggcgtggaggcctgccacgaaacataccgccgcctgcaatccaagcgtccc
gacctggattacgacatcgacggcgttgtgttcaaatgcaaccgcttcgattggcaggag
ctcgccggcttcgtggcgcgtgcgccgcgctgggccgtcgcccgcaaatttccggcggag
gaggccaccacccgcgtcgtcgccatcgacgtgcaagtggggcgcacgggcgccctgacg
cccgtggcgcggctggagccggtgttcgtcggcggcgtcaccgtcaccaacgccacgctg
cacaacgccgacgaagttcaacgcaaggacgtcagggtaggggataccgtggtggtcagc
cgtgccggcgacgtgattcccaaggtggatcgcgtgttgctggaagcgcggccggccgac
gcgcagcctttcgtcatgccggatcgctgccccgtttgcgattcgggggtggtggcggtc
gagggcgaggcgatattgcgctgcggcggcggtctgtactgtccggcgcaacacaaggag
tcggtcaaacatttcgccagccgtcgcgccatggacatcgacgggctgggcgataagctg
gtggatcagttgttggaccagggccgcatcaagaccgtggccgatctttacctccttgcc
gtggaggatctggccagcttggagcgcatgggggaaaagtcggcggagaacctcgttcgc
gccatcgagaaaagcaagcgcacgactttggcgcgtttcctctacgccctgggaatccgc
gaggtgggcgaggccacggcgcaaaccttggcgggccatttccacacgttggacgccctg
atggcggcggacgaggccgcgctgcagacggcgccggacgtggggccggccgtggcggga
caaatcgtggcgtttttcgcccaagcgcacaatcgcgaagtgatcgccgccttgcgcgcg
gccggcgtgcattggacggaaggggtgccggagggcgtgggcgagcggccgttgctgggc
cagatcttcgtcttgaccggcacgctggagtccatgacccgcgacgaggccaaggataag
ctgctggccttgggagccaaggtggccggcagcgtttcgaaaaaaaccaattacgtcgtg
gccggcagcgaggccggttccaagctggtcaaggccgaagcgctgggcgtcgaaatactg
agcgagacggcgttcttggcgttattagctcgctga
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integrated database retrieval system
