Mycobacterium paraterrae: MKK62_16655
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Entry
MKK62_16655 CDS
T08203
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mpaa
Mycobacterium paraterrae
Pathway
mpaa03030
DNA replication
mpaa03410
Base excision repair
mpaa03420
Nucleotide excision repair
mpaa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mpaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MKK62_16655 (ligA)
03410 Base excision repair
MKK62_16655 (ligA)
03420 Nucleotide excision repair
MKK62_16655 (ligA)
03430 Mismatch repair
MKK62_16655 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mpaa03032
]
MKK62_16655 (ligA)
03400 DNA repair and recombination proteins [BR:
mpaa03400
]
MKK62_16655 (ligA)
Enzymes [BR:
mpaa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MKK62_16655 (ligA)
DNA replication proteins [BR:
mpaa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MKK62_16655 (ligA)
DNA repair and recombination proteins [BR:
mpaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MKK62_16655 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MKK62_16655 (ligA)
MMR (mismatch excision repair)
DNA ligase
MKK62_16655 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MKK62_16655 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Auto_anti-p27
HHH_8
Motif
Other DBs
NCBI-ProteinID:
UMB68083
LinkDB
All DBs
Position
3723669..3725747
Genome browser
AA seq
692 aa
AA seq
DB search
MSSPEDDPVPPEIRRTWRELADEVREHQFRYYVRDAPIISDADFDVLLRRLSALEDEHPE
LRTPDSPTQLVGGAGFATDFTSADHLERMLSLDNVFSAEEFDLWTGRVHGEVGSDVPFLC
ELKIDGVALALVYRNGRLVRAATRGDGRTGEDVTLNARTIDDVPERLTPSDDHPVPDVLE
VRGEVFFRLDDFEALNAALVEDGKAPFANPRNSAAGSLRQKDPAVTARRKLRMICHGLGH
VEGYRPDSLHDAYLALAAWGLPVSDHTTRVENAAGALERIAYWGEHRHDVDHEIDGVVVK
VDDVALQRRLGSTSRAPRWAIAYKYPPQEVQTKLLDIRVNVGRTGRVTPFAFMTPVTVSG
STVGLATLHNAAEVKRKGVLIGDTVVLRKAGDVIPEVLGPVVDLRDGSEREFVMPTTCPE
CGTPLAPAKEGDADIRCPNSRSCPAQLRERVFHVAGRGAFDIEGLGYEAATALLKAQVIE
DEGDLFSLTEDELLRTDLFTTKAGTLSANGKRLLANLEKAKKQPLWRVLVALSIRHVGPT
AARALATEFGDLDAITSASTEQLAAVEGVGPTIADAVTEWFTVDWHCRIVEKWRSAGVRM
ADERDSSVPRTLEGLTIVVTGSLPNFSRDDAKEAILTRGGKAAGSVSKKTDYVVAGDSPG
SKYDKAVELGVPILDEDGFRKLLEEGASGSGE
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
gtgagttcacccgaggacgatcctgtcccgccggagatacgtcgtacgtggcgcgaactg
gccgacgaagtgcgcgagcatcagttccgctactacgtgcgcgacgcgccgatcatctcc
gacgcggacttcgacgtactgctgcgccggttgtccgcactcgaagacgagcatcccgaa
ctgcgcacacctgattcgccgacccagctggtcggtggtgccgggttcgccaccgatttc
acctccgctgatcacctcgagcgaatgttgtccctggacaacgtgttcagcgccgaagag
ttcgacctgtggaccggccgcgtccatggcgaagtcggtagcgacgttccttttttgtgc
gagctcaagatcgacggcgttgctttggcgttggtctatcgcaacggccgcttggtgcgg
gccgcaacccgcggtgacgggcgcaccggcgaagatgtcacgctgaacgcgcgcaccatc
gacgacgtacccgaacggctcacgcccagcgatgaccacccggtgccggacgtcttggag
gtgcgcggcgaggtgttctttcgcctcgacgatttcgaggctctcaacgccgcgctcgtc
gaggacggcaaggctccgttcgccaacccgcgtaacagcgcggccggatctttgcgccag
aaggacccggcggtcacggctcgtcgaaaactccggatgatctgccacggtctgggccat
gtcgagggctatcggccggatagcctgcatgacgcgtatctggccctggcggcttggggc
ctaccggtttccgaccacaccacccgcgtcgagaacgcggccggtgcgctcgagcgcatt
gcttactggggcgagcaccgccacgacgtcgaccacgaaatcgacggtgtcgtcgtcaaa
gtcgacgacgtagcgctgcagcgcaggctcggctcgacgtcgcgggcaccgcgctgggcg
atcgcctacaagtacccgccgcaggaagtccagaccaaactgctcgacatccgtgtcaac
gttggccgcaccgggcgtgtcaccccgttcgcgttcatgacgccggtgaccgtctccggg
tcgacggtcggcttggccaccctgcacaacgccgcggaggttaaacgtaagggcgtgttg
atcggggacacggtggtgctccgcaaggccggcgatgtgatccctgaagtgctcggccct
gtcgtcgatctgcgcgacggctccgagcgcgaattcgtcatgcccacaacgtgtcccgaa
tgcggcacaccgttggcgccggccaaggagggcgacgccgatattcgctgccccaattcg
cggtcctgcccggcgcaattgcgcgagcgggtgttccacgtcgcgggtcgcggtgcgttc
gacatcgaggggctcggctacgaagccgccaccgccctgttgaaggcacaggtaatcgag
gacgagggcgacctgttcagcctcaccgaagacgaattgctgcgcaccgacttgttcacc
accaaagcggggacgctgtccgccaacggcaaacgcctgctcgccaacctcgagaaggcc
aagaagcagccgctgtggcgggtgctggtggcgctgtcgatccggcacgtcgggccgacg
gcggcgcgggcgctggccaccgagttcggcgacctggatgcgatcacctctgcgtccacc
gagcaattggccgcagtcgagggcgtcggtccgaccatcgccgacgctgtgacggagtgg
ttcaccgtcgattggcactgccggatcgtcgaaaagtggcgatcggcaggggtgcggatg
gccgatgagcgtgactccagcgtgccgcgcacgctggagggcctgaccattgtcgtcacc
gggtcactgccgaatttctcccgcgacgatgccaaggaggcaatcctgacgcggggcggc
aaggcggccggttcggtgtcgaagaagaccgactacgtcgtcgcaggcgactctcccggc
tccaagtacgacaaggcagtcgaactcggcgtgccgattctcgacgaggacggatttcga
aagctgttggaggaaggcgcttctgggtcaggggagtag
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