Mycolicibacterium pallens: K0O64_09620
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Entry
K0O64_09620 CDS
T07675
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mpae
Mycolicibacterium pallens
Pathway
mpae03030
DNA replication
mpae03410
Base excision repair
mpae03420
Nucleotide excision repair
mpae03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mpae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K0O64_09620 (ligA)
03410 Base excision repair
K0O64_09620 (ligA)
03420 Nucleotide excision repair
K0O64_09620 (ligA)
03430 Mismatch repair
K0O64_09620 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mpae03032
]
K0O64_09620 (ligA)
03400 DNA repair and recombination proteins [BR:
mpae03400
]
K0O64_09620 (ligA)
Enzymes [BR:
mpae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K0O64_09620 (ligA)
DNA replication proteins [BR:
mpae03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K0O64_09620 (ligA)
DNA repair and recombination proteins [BR:
mpae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K0O64_09620 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K0O64_09620 (ligA)
MMR (mismatch excision repair)
DNA ligase
K0O64_09620 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K0O64_09620 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Auto_anti-p27
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
QYL19824
LinkDB
All DBs
Position
1950201..1952282
Genome browser
AA seq
693 aa
AA seq
DB search
MDPDVRRRWQDLAEEVREHQFRYYIKDAPIVSDAEFDKLFNELLALEERFPELRVPDSPT
QLVGGAGFATDFAEAAHLERMLSLDDVFNTEELAAWSNRVEAEIGKDPQYLCELKIDGVA
IALVYRNGRLERAATRGDGRVGEDVTNNARTIDDIPENLTGTDEYPVPALLEVRGEVFFR
VADFENLNASLVEEGKAPFANPRNSAAGSLRQKNPAVTARRRLRMICHGLGRAEFSAGYA
PASLHDTYFALKAWGLPVSDHTTRVAGLAAVEEKIVYWGERRHEIEHEIDGVVVKVDDFA
QQRRLGATSRAPRWACAYKYPPEEAQTKLLDIQVNVGRTGRVTPFAMMTPVKIAGSTVGM
ATLHNGSEVKRKGVLIGDTVMIRKAGDVIPEVLGPVVDLRDGSEREFVMPTHCPECGTPL
APAKEGDVDIRCPNARSCPAQLRERVFHLAGRGGLDIEGLGYEAATALLAAKVITDEGDL
FSLTSADLLTSDFFKTKDGALSANGARFLVNLQQAKDRPLWRILVALSIRHVGPTAARAL
AVAFGSLDAIMAASEEQLADVEGVGPTIAAALVEWFAVDWHRAIVDKWRAAGVRMEDVRD
SSITPTLQGLSIVVTGSLPNFSRDEAKEAIISRGGKAVGSVSKKTSYVVAGDSPGSKYDK
AVELGVPILDEDGFRTLLEQGPPPADADSDADE
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atcgatccggatgtgcggcggcgttggcaggatcttgccgaagaggtgcgtgagcatcag
ttccgctactacatcaaggacgcgccgatcgtgtccgacgcggagttcgacaagctgttc
aacgagctgctcgccctcgaggagcgcttccccgagcttcgggttcccgactcgcccacc
cagctggtcggcggtgccgggttcgccaccgacttcgccgaggcagcccacctcgaacgc
atgctcagcctcgacgacgtgttcaacaccgaggagctggcggcctggtccaaccgggtg
gaagccgagatcggcaaagacccgcagtacctctgcgagctgaagatcgacggtgtcgcg
atcgccctggtgtaccgcaacggccggctggagcgtgccgccacccgcggtgacggccgg
gtcggcgaggacgtcaccaacaacgcccgcaccatcgacgacatccccgaaaacctcacc
gggacagatgaataccccgtgcctgcgctcctggaggtgcgcggcgaggtgttcttccgg
gtggctgacttcgagaacctcaacgccagcctggtggaggagggcaaggcgccgttcgcc
aacccgcgcaacagcgcggccggctcactgaggcagaagaatccggcggtcaccgcgcgg
cggcggctgcggatgatctgccacggcctgggccgcgcggagttttcggcaggctatgcc
cccgcctccctgcacgacacctacttcgccctgaaggcctggggtctgccggtctccgac
cacaccactcgggtggcggggctcgccgctgtcgaggagaagatcgtctactggggcgag
cgccgccacgagatcgagcacgaaatcgacggtgtggtggtcaaagtcgacgacttcgct
cagcaacgccgcctcggcgccacctcccgcgcgccgcgctgggcgtgcgcgtacaagtac
ccgccggaggaagcccagaccaagctgctcgacattcaggtcaacgtcggccgcaccggc
cgcgtcaccccgttcgcgatgatgacgccggtgaagatcgccgggtcgaccgtgggcatg
gccaccctgcacaacgggtcggaggtcaagcgcaagggtgtcctgatcggcgacacggtg
atgatccgcaaggccggtgacgtcatccccgaggtgttgggtcccgtcgtcgacctgcgc
gacggctccgagcgcgaattcgtgatgcccacccactgcccggagtgcggcacccccttg
gccccggcgaaggagggtgacgtcgacatccgctgccccaacgctcggtcgtgtcccgcg
cagctgcgcgagcgggtgttccacctggccgggcgcggcgggctggatatcgaagggttg
ggctatgaggcggcgaccgcgttgctggcggccaaggtcatcaccgacgaaggtgacctg
ttcagcctcaccagcgccgacctgctgacctcggatttcttcaagaccaaggacggtgcg
ctgtcggctaacggcgcccggttcctggtcaatctgcaacaggccaaggaccggccgctg
tggcggatcctggtggcgctgtccatccggcacgtcgggccgaccgcggcccgcgcgctg
gcggtggcgttcggcagcctcgacgccatcatggcggcgtccgaggaacagctcgccgac
gtcgagggtgtcggaccgacgatcgcggccgccctggtcgagtggttcgccgtcgactgg
catcgcgcgatcgtcgacaagtggcgggcggccggcgtgcggatggaagacgttcgcgac
tcgtcgataacgcctacgctgcaagggctttcgatcgtggtcaccgggtcgctgccgaac
ttctcccgcgatgaggccaaggaggcgatcatcagccgcggcggtaaggcggtcggctcg
gtgtcgaagaagacctcctacgtcgtggcgggagattcgccgggctcgaagtacgacaag
gctgtcgagctgggtgtaccgatcctcgacgaggacgggtttcgcaccctgctggaacag
ggcccgccgcccgccgacgccgattccgacgccgacgagtga
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