KEGG   Mycobacterium paragordonae: C0J29_09865
Entry
C0J29_09865       CDS       T06847                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
mpag  Mycobacterium paragordonae
Pathway
mpag03030  DNA replication
mpag03410  Base excision repair
mpag03420  Nucleotide excision repair
mpag03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mpag00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    C0J29_09865
   03410 Base excision repair
    C0J29_09865
   03420 Nucleotide excision repair
    C0J29_09865
   03430 Mismatch repair
    C0J29_09865
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mpag03032]
    C0J29_09865
   03400 DNA repair and recombination proteins [BR:mpag03400]
    C0J29_09865
Enzymes [BR:mpag01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     C0J29_09865
DNA replication proteins [BR:mpag03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     C0J29_09865
DNA repair and recombination proteins [BR:mpag03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     C0J29_09865
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     C0J29_09865
   MMR (mismatch excision repair)
    DNA ligase
     C0J29_09865
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      C0J29_09865
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT HHH_5 Nlig-Ia HHH
Other DBs
NCBI-ProteinID: AYE95044
LinkDB
Position
2100434..2102500
AA seq 688 aa
MTSTEVLREWQDLAEEVREHQFRYYVRDAPIITDAEFDKLLRRLEALEAQYPELRTPDSP
TQLVGGAGFATEFEAAEHLERMLSLDNAFSADELSAWAARVHAEVGDDAHYLCELKIDGV
ALSLVYRDGRLARAATRGDGRTGEDVTLNARTIDDVPLRLSPSDDYPVPEVLEVRGEVFF
RVDDFAALNASLVEDGKAPFANPRNSAAGSLRQKDPAVTARRKLRMICHGLGHTEGFRPV
SQHAAYLALKEWGLPVSTHTTVVSGLTSVQERIEYWGEHRHEVDHEIDGVVVKVDETALQ
RRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGSTVAQAT
LHNASEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGSEREFVMPTTCPECGTTLAP
EKEGDADIRCPNSRGCPAQLRERVFHVASRNALDIEVLGYEAGAALLQSGAISDEGDLFS
LSEEDLLRTELFRTKAGDLSANGRRLLANLDKAKEAPLWRVLVALSIRHVGPTAARALAA
AFGTLDAIAGATTEELAAVEGVGTTIAAAVTDWFTVDWHRDIVDKWRATGVRMADERDDS
VPRNLAGLSIVVTGSLTGFSRDDAKEAIVSRGGKAAGSVSKKTSFVVVGDSPGSKYDKAV
ELGVPILDEDGFRKLLAEGPPETEPAPE
NT seq 2067 nt   +upstreamnt  +downstreamnt
gtgacgtctaccgaggtgctccgcgagtggcaggacctggccgaggaggtacgcgaacac
cagttccgctactacgtgcgcgatgcgccgatcatcaccgacgccgaattcgacaaactg
ctgcgcaggctggaggcgcttgaggcgcagtaccccgagctgcgcactcctgactcgccg
acccaactggtcggcggggcggggttcgcgacggagttcgaggcggccgagcacctcgag
cggatgctgagcctcgacaatgcgttcagcgccgacgaactgagcgcctgggcggccaga
gtgcacgccgaggtcggcgacgacgcgcactacctctgtgaactcaagatcgacggcgtc
gcgctgtcgctggtgtaccgggacggacgtctggcccgggccgcaacccggggagacggc
cgcaccggcgaggacgtcacgctcaacgcgcgcaccatcgacgacgtgccgctgcggttg
tccccgagcgatgactacccggtgcccgaagttctcgaggtgcgcggcgaggtcttcttc
cgggtcgacgatttcgcggccctgaacgcgagcctggtcgaggatggcaaggcgccgttc
gccaatccgcgcaacagcgccgcgggctcgctgcgccagaaggaccccgccgtcaccgcc
cgccgcaaactgcggatgatctgccacgggctggggcacaccgagggctttcggccggtc
agccagcacgccgcctacctggcgctcaaggagtggggcctgccggtctccacgcacacc
accgtcgtcagcgggctgacgtcggtccaggagcgcatcgagtactggggcgagcaccgg
cacgaggtggaccacgaaatcgacggcgtggtggtcaaggtcgacgagacggcgttgcag
cgccggctgggttccacctcgcgggcaccgcgctgggcgattgcctacaagtacccgccg
gaagaagcccagacgaagctgctcgacatccgggtcaacgtcgggcgcaccgggcgggtc
actccgttcgcgttcatgacgccggtcaaagtggccggctcgacggtggcgcaggccacg
ctgcacaacgcctcggaggtcaaacgcaagggcgtgctgatcggcgacacggtggtgatc
cgcaaggccggcgacgtgatcccggaggtactgggtcccgtggtcgacctgcgcgacggc
tccgaacgcgaattcgtcatgcccacaacgtgtcccgagtgcggcaccaccctggcgccg
gagaaggagggcgacgccgatatccggtgccccaactcccgaggctgcccggcgcagttg
cgtgagcgcgtcttccacgtggccagccgcaacgccctggacatcgaggtgctcggctac
gaggccggggccgcgctgttgcagtccggggcgatctccgacgaaggcgacctgttcagc
ctcagcgaagaggacctgctgcgcaccgagctgttccggaccaaggccggcgacttgtcg
gccaacggcaggcggctgctggccaacctggacaaggccaaggaggcgccgctgtggcgc
gtcctggtggccctgtcgatccggcacgtcgggccgacggcggcgcgcgcgctggcggcc
gccttcggcacgctcgatgcgatcgccggggcgacgaccgaagagctggccgccgtggaa
ggggtgggcaccaccatcgcggccgcggtcaccgactggttcaccgtcgactggcaccgc
gacatcgtcgacaagtggcgcgccaccggtgtccggatggccgacgaacgcgacgacagc
gtgccgcgcaacctggcggggctgagcatcgtggtgaccggctcgctgaccggcttctcc
cgcgatgacgccaaggaggcgatcgtcagccggggcggcaaggcggccggttcggtgtcg
aagaagacctccttcgtcgtggtcggcgactcacccggctccaaatacgacaaggccgtc
gagctcggcgtcccgatcctcgatgaagacgggttccggaaactgctggccgaagggccg
ccggaaaccgaacccgccccggagtga

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