KEGG   Mus pahari (shrew mouse): 110327206
Entry
110327206         CDS       T05929                                 
Symbol
Ldlr
Name
(RefSeq) low-density lipoprotein receptor isoform X1
  KO
K12473  low-density lipoprotein receptor
Organism
mpah  Mus pahari (shrew mouse)
Pathway
mpah03272  Virion - Hepatitis viruses
mpah04144  Endocytosis
mpah04913  Ovarian steroidogenesis
mpah04925  Aldosterone synthesis and secretion
mpah04927  Cortisol synthesis and secretion
mpah04934  Cushing syndrome
mpah04976  Bile secretion
mpah04979  Cholesterol metabolism
mpah05145  Toxoplasmosis
mpah05160  Hepatitis C
mpah05417  Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:mpah00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03272 Virion - Hepatitis viruses
    110327206 (Ldlr)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    110327206 (Ldlr)
 09150 Organismal Systems
  09152 Endocrine system
   04913 Ovarian steroidogenesis
    110327206 (Ldlr)
   04925 Aldosterone synthesis and secretion
    110327206 (Ldlr)
   04927 Cortisol synthesis and secretion
    110327206 (Ldlr)
  09154 Digestive system
   04976 Bile secretion
    110327206 (Ldlr)
   04979 Cholesterol metabolism
    110327206 (Ldlr)
 09160 Human Diseases
  09172 Infectious disease: viral
   05160 Hepatitis C
    110327206 (Ldlr)
  09174 Infectious disease: parasitic
   05145 Toxoplasmosis
    110327206 (Ldlr)
  09166 Cardiovascular disease
   05417 Lipid and atherosclerosis
    110327206 (Ldlr)
  09167 Endocrine and metabolic disease
   04934 Cushing syndrome
    110327206 (Ldlr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:mpah04131]
    110327206 (Ldlr)
Membrane trafficking [BR:mpah04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Low-density lipoprotein receptor (LDLR) family proteins
    110327206 (Ldlr)
SSDB
Motif
Pfam: Ldl_recept_a Ldl_recept_b FXa_inhibition cEGF EGF_CA SGL EGF_LRP2 hEGF EGF_3
Other DBs
NCBI-GeneID: 110327206
NCBI-ProteinID: XP_021061644
Ensembl: MGP_PahariEiJ_G0014746
LinkDB
Position
10:17075823..17100635
AA seq 861 aa
MSTADLMRRWAIALLLAAAGVAAEDSCSRNEFQCRDGKCIASQWVCDGSPECPDGSDESP
ETCMSVTCQSNQFSCGGRVSRCIPDSWRCDGRVDCDNDSDEQGCPPKTCSLDDFRCQDGK
CISRQFVCDGDRDCLDGSDEAHCEATTCGPAHFRCNSSTCIPSLWACDGDVDCDDGSDEW
PQNCRGRDTASKGVSTPCSSLEFHCGSSECIHRSWVCDGEADCKDKSDEEHCAVATCRPD
EFQCADGSCIHGSRQCDREHDCKDMSDELGCNNVTQCDGPNKFKCHSGECISLDKVCDSA
RDCRDWSDEPIKECKTNECLDNNGGCSHICKDLKIGSECLCPSGFRLVDLHRCEDIDECQ
EPDTCSQLCVNLEGSYKCECRAGFHMDPHTRVCKAVGSMGYLLFTNRHEVRKMTLDRSEY
TSLLPNLKNVVALDTEVASNRIYWSDLSQKKIYSALMDQAPSLSYDTIISGDLHAPDGLA
VDWIHSNIYWTDSIPGSVSVADTKGIKRRMLFQEAGSRPRAIVVDPVHGFMYWTDWGTPA
KIKKGGLNGVDIHSLVTEDIQWPNGITLDLSSGRLYWVDSKLHSISSIDVNGGNRKTILE
DENQLAHPFSLAIYEDKVYWTDVINEAIFSANRLTGSDVNLVAENLLSPEDIVLFHNITQ
PRGVNWCETTALPNGGCQYLCLPAPQIGPHSPKFTCACPDGMLLAKDMRSCLTEVDTVLT
TQGTSAIGPVVTASAAGPPKHREDLSAPSTPRQPVDTPGLSTVASVTVSHQVQGDMAGRG
NEEQPHGVRFLSIFFPVALVALLVLGAILLWRNWRLKNINSINFDNPVYQKTTEDELHIC
RSQDGYTYPSRQMVSLEDDVA
NT seq 2586 nt   +upstreamnt  +downstreamnt
atgagcaccgcggatctgatgcgtcgctgggccatcgccctgctcctggctgctgccgga
gtggcagccgaagactcatgcagcaggaacgagttccagtgtagagacggaaaatgcatc
gccagccagtgggtgtgcgacggcagccctgagtgcccggatggctccgatgagtcccca
gagacatgcatgtctgtcacctgtcagtccaatcaattcagctgtggaggccgtgtcagc
cgatgcattcctgactcctggagatgtgatggacgggtagactgtgacaatgactcagat
gaacaaggctgcccccccaagacgtgttccctggatgacttccgctgccaggatggcaaa
tgcatctctcggcagtttgtgtgtgatggagaccgagattgcctggacggctctgacgag
gcccactgcgaggccaccacttgtggccccgcccacttccgctgcaactcatccacatgc
atccccagcctttgggcctgcgacggggatgtggactgtgacgacggctctgatgagtgg
ccacagaactgccggggccgagacacggcctccaaaggggttagcactccctgctcctcc
ctggagttccactgtggcagtagtgagtgtatccatcgcagctgggtctgtgacggcgag
gcagactgcaaggacaagtcagatgaggagcactgcgcggtggccacctgccgacctgat
gaattccagtgtgcagatggctcctgcattcacggtagccgccagtgtgaccgtgaacat
gactgcaaggacatgagcgacgagctcggatgcaacaatgtgacacagtgtgatggcccc
aacaagttcaagtgtcacagtggggagtgcatcagcttggacaaggtgtgcgactccgcc
cgggactgccgggactggtcagatgagcccatcaaggagtgcaagaccaacgagtgtttg
gacaacaatggtggctgttcccacatctgcaaggacctcaagattggctctgagtgcctg
tgtcccagtggcttccggctggtggacctccacaggtgtgaagatattgacgagtgtcag
gagccggacacctgcagccagctctgtgtgaacctggaaggcagctacaagtgtgagtgc
agggccggcttccacatggaccctcacaccagggtctgcaaggctgtaggctccatgggc
tatctgctcttcactaaccgccatgaggtccggaagatgaccctggaccgcagcgagtac
actagcctgctccccaacctgaagaatgtggtggctctggacactgaggtggccagcaat
agaatctactggtccgacctgtcccaaaaaaagatctacagtgccctgatggaccaggcc
cctagcttgtcctacgacaccatcatcagtggggacctgcatgcccctgacgggctggcg
gtagactggatccacagcaacatctactggacggattcgatcccaggcagtgtgtctgtg
gctgacaccaagggcataaagaggagaatgctgttccaagaggcagggtccagacccaga
gccattgtagtggaccctgtgcatggcttcatgtactggacagattggggaacacctgcc
aagatcaagaaagggggtttgaatggtgtggacatccactcactggtgacggaggatatc
cagtggccaaatggcatcacactagatctttccagcggccgtctctattgggttgattcc
aaactccactccatctccagcattgatgtcaacgggggcaatcggaaaaccattttggag
gatgagaaccagctggcccaccccttctccttggccatctatgaggacaaagtgtattgg
acagatgtcataaacgaagccattttcagtgccaatcgactcacgggttcagatgtgaat
ttggtggctgaaaacctcttgtccccggaggacattgtcctgttccacaacatcacacag
cctagaggggtgaactggtgtgagacaacagccctccccaatggtggttgccagtacctg
tgcctgcccgccccacagatcggtccccactcacccaaattcacctgcgcctgccctgac
ggcatgctgctggccaaggacatgcggagctgcctcacagaagtggacactgtactgacc
acccaggggacatctgccatcgggcctgtggtcaccgcatcagctgccgggccaccgaag
cacagggaggatctctcagctcccagcactcctaggcagcctgtggacaccccagggctc
agcacagtggcatcggtgacagtgtcccaccaagtccagggtgacatggctggcagaggg
aacgaggagcagccacacggtgtgaggttcttgtccatcttcttccctgttgcactggtc
gccctccttgtccttggggccatcctgctgtggaggaactggcggctgaagaacatcaac
agcataaactttgacaacccagtttaccagaagaccacagaggacgaactccacatttgc
cgaagccaggacggctatacctacccctcaagacagatggtcagcctggaggatgatgtg
gcgtga

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