Mus pahari (shrew mouse): 110331058
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Entry
110331058 CDS
T05929
Symbol
Eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component isoform X1
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110331058 (Eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mpah03041
]
110331058 (Eftud2)
Spliceosome [BR:
mpah03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
110331058 (Eftud2)
Complex C
U5 SnRNP specific factors
110331058 (Eftud2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
110331058
NCBI-ProteinID:
XP_021067059
Ensembl:
MGP_PahariEiJ_G0018393
LinkDB
All DBs
Position
14:complement(70283915..70326769)
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AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDEDEDEDDVGEHEDDHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PSSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggatactgacttgtatgatgaatttgggaattatattggaccagagcttgattctgat
gaagatgatgatgaactgggaagagagacaaaagatcttgatgagatggatgaggatgag
gacgaggatgatgtgggagagcacgaggatgaccaccccgggatggaggtggtgctgcat
gaggacaagaagtactaccccacggccgaggaggtgtacggccccgaggtggagaccata
gtccaggaggaagacacccagcccctcacagagcccattataaagccagtgaaaaccaag
aaattcactctgatggagcagacattacccgtcacggtgtatgagatggatttcttagct
gatctgatggacaactctgaactcatccgaaatgtgaccttgtgtggccatctccaccat
ggcaagacctgttttgtagattgtttaatagaacagacgcatccggaaatcagaaagcgc
tatgaccaggacctatgctatactgacatcctcttcacagaacaagagagaggcgttggc
atcaagagcactcctgtgacggtggtgctgccggacaccaaagggaagtcttacctcttc
aacatcatggacacgccaggtcatgtgaatttttctgatgaggtcacagctggcttgcgc
atctcagatggagtggtccttttcattgatgctgctgagggggtgatgctgaacacagag
cggctgatcaaacacgcagtgcaggaaaggctagcggtcaccgtgtgcatcaacaaaatc
gaccggctgatcctggagctgaagttgcctccaacagatgcttattacaagctgcgacac
attgtggatgaggtcaatggattgattagcatgtattccaccgacgagaacctgatcctt
tctccgctcctgggcaacgtctgcttctccagttcccagtacagcatctgcttcacactg
ggctcctttgccaagatctatgctgacacctttggtgacattaattaccaggaatttgcc
aaaagactctggggtgacatctacttcaatcctaagacgagaaagttcacaaaaaaggct
ccaagcagcagctcccagaggagcttcgtggagttcatcttggagccgctgtataagatc
ctggcccaggtagtgggtgatgtggacaccagcttgccaaggaccctggacgaacttggc
atccacctcaccaaggaagagctaaagctgaacatccgccccctgctcaggctggtctgc
aaaaagttctttggcgagttcacaggctttgtggacatgtgtgtgcagcacattccatct
ccaaaggtgggcgccaaacccaagatcgagcatacctacactggcggcgtggactctgac
cttggcgaggccatgagcgactgtgacccagatggtcccctgatgtgccacacaacaaag
atgtacagcacagatgacggagtccagtttcatgccttcggccgggtgctgagtggcacc
atccacgctgggcagcctgtgaaggtgctgggggagaactacaccctggaagacgaggaa
gattcccagatctgcaccgtgggccgcctttggatctcagtcgccaggtaccacattgag
gtgaatcgtgttcctgctggcaactgggttctgattgaaggtgttgaccagccgatcgtg
aagacagcaaccataactgaaccccgaggcaacgaggaggctcagattttccggcccttg
aaattcaataccacatctgttatcaagattgcagtggagccggttaacccctcagagctg
cccaaaatgcttgatggcctgcgcaaggtcaacaagagctatccgtctctcaccaccaag
gtggaagagtctggtgagcatgtgatcctgggcactggggagctctacctggactgtgtg
atgcacgaccttcggaagatgtactcagagatcgacatcaaggtggctgacccagttgtg
acgttttgtgagacagtggtagaaacatcctccctcaaatgctttgctgagacacccaat
aagaagaacaagatcaccatgattgctgagcctcttgagaagggccttgctgaggacata
gagaatgaggtggtccagatcacctggaacagaaagaagctgggagagtttttccaaaca
aagtacgactgggatctgctggctgcccgttccatctgggcctttggtcctgatgctaca
ggccccaacatcctagtagatgatacgctgccctcagaggtagacaaggcccttcttggt
tcagtgaaggacagcattgttcaaggtttccagtgggggaccagggaaggacccctctgc
gatgaattgattcggaatgtcaagtttaagatcctggatgctgtggttgctcaggaaccc
ctccaccggggtggaggtcagatcatccccacagccaggagggtagtatactctgccttc
ctcatggccacgccccgtctgatggagccttactactttgtagaggtccaggctcctgca
gattgtgtgtctgctgtctacacagtcctggccaggcgcaggggtcatgtgactcaggat
gcacccataccaggctcccctctctataccatcaaagcgttcatcccggccattgactca
ttcggctttgagactgatctccgcactcacacccagggacaggccttttccctgtctgtc
ttccaccattggcagattgtcccaggtgatcctctggacaagagcattgtcatccgcccg
ctggagccacagccagctcctcacctggctcgggagttcatgatcaaaacccgtcgtagg
aagggcctgagtgaagatgtgagcatcagcaagttcttcgatgatcccatgttgctggag
ctcgccaaacaggacgttgtactcaattatcccatgtga
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