Mus pahari (shrew mouse): 110331543
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Entry
110331543 CDS
T05929
Symbol
Smcr8
Name
(RefSeq) guanine nucleotide exchange protein SMCR8
KO
K23611
guanine nucleotide exchange protein SMCR8
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah04140
Autophagy - animal
mpah05014
Amyotrophic lateral sclerosis
mpah05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
110331543 (Smcr8)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
110331543 (Smcr8)
05022 Pathways of neurodegeneration - multiple diseases
110331543 (Smcr8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mpah04131
]
110331543 (Smcr8)
Membrane trafficking [BR:
mpah04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
110331543 (Smcr8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Folliculin
Motif
Other DBs
NCBI-GeneID:
110331543
NCBI-ProteinID:
XP_021067900
Ensembl:
MGP_PahariEiJ_G0017593
LinkDB
All DBs
Position
14:28826278..28833493
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AA seq
935 aa
AA seq
DB search
MISAPDVVAFTKEDEYEEEPYNEPALPEEYSVPLFPYASQGANPWSKLSGAKFSRDFILI
SEFSEQVGPQPLLTIPNDTKVFGTFDLNYFSLRIMSVDYQASFVGHPPGSAYPKLNFVED
SKVVLGDSKEGAFAYVHHLTLYDLEARGFVRPFCMAYISADQHKIMQQFQELSAEFSKAS
ECLKMGNRKAFAGELEKKLKDLDYTRTVLHTETEIQKKANDKGFYSSQAIEKANELANVE
KSIIEHQDLLRQIRSYPRQKMKIPDLHTGDTEHTQDQADQVSTTSNPEESANADLYTCRP
AYTPKLIKAKSTKCFDKKLKTLEELCDTEYFTQTLAQLSHIEHMFRGDLCYLLTSQIDRE
LRKQQPITNFLFEDFVEVDDRMEKQENVPSQPSQDRLPPKPVEECPIPKVLISVGSYKSS
VESVLIKMEQELGDEEYKEVDATEARGFDPQENLDYLDMDMKGSISSGESIEVLGTEKSA
SVLSKSDSQASLTVPLSPHVVRSKAVSHRTISEDSIEVLSTCPSEALIPDDFKASYPSAI
NEEEAYADNEGAIHFRASASSPELDETQEGNLENIPSQIDSSCCIGKESEGQLVPLPTPA
YTLSDEDGVVSIPPQRYIQKDQGLHVDFGMENTDPSPRDNSCEMFPAYELDPSCLLASRD
VSKMSLDNYSDTTSYMGSVASASSDRIPSVPPAGLSSERHKKRAGQNALKFIRQYPFAHP
AIYSLLSGRTLVVLGEDETIVRKLVTALSIFVPNYGCYAKPVKHWISSPLHIMDFQKWKL
IGLQRVASPANVGTLHTLSRYSRYTSILDLDSKTLRCPLYRGTLVPRLADHRTQIKRGST
YYLHVQSMLTQLCSKAFLYTFCHHLHLPAHSEETQEAVASRQTSFLKLTLGLVNEDVRVV
QYLAELLKLHYMQESPGATHPLLRFDYVPSFLYKI
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgatcagcgcccctgatgtggtggccttcaccaaggaagacgaatatgaggaagaacct
tacaatgagcccgctttgcctgaggagtactctgtccctctctttccttatgccagccag
ggagcaaacccctggtctaaactgtctggggccaagttctccagggacttcatcctcatt
tccgagttctctgagcaggtgggaccccagcctttgcttaccatccccaatgacaccaag
gtttttggcacttttgatcttaattacttctctttgcggattatgtcggtagattaccag
gcttcgttcgtaggccatccccctggttctgcctaccccaagttgaactttgtggaagac
tctaaagtggtactgggagattctaaggaaggggcctttgcatatgtgcaccaccttacc
ttgtatgacctggaggccaggggctttgtgaggcccttttgtatggcttatatctctgca
gaccagcataaaatcatgcaacagttccaagagctttcggccgaattttccaaagcatct
gagtgcttgaagatgggcaacaggaaggcattcgctggggaacttgaaaaaaagctgaaa
gacttggattacacgaggacagtgctacacacagaaaccgagatccagaagaaagccaat
gacaagggtttttattcttctcaggcaattgagaaagccaatgaactggccaatgtggag
aagtccatcattgaacatcaagatttgctgaggcagatccgctcataccctcgtcagaag
atgaagatacctgacttgcatactggtgatacagagcatacccaggatcaggctgaccag
gtatccactacctctaatcctgaggagtctgctaatgcagacctttatacctgcagaccg
gcttacacccccaaactcatcaaagcaaagtccaccaagtgttttgacaagaagttgaag
accttggaggaactctgtgacactgagtatttcactcagaccctggcccagcttagccac
attgaacacatgttcagaggagacctgtgctacctcctgaccagtcagattgacagagag
cttcgaaaacaacaacccataacgaatttcctctttgaagattttgtagaggtggatgac
aggatggagaagcaagagaatgtgccctctcagcctagtcaggacaggctgcctcccaag
cctgtagaagaatgccccattcctaaagtgttaattagtgttggctcttacaagtccagt
gtggagtctgtattgatcaagatggagcaggaactgggagatgaagagtacaaggaagtg
gatgcaacagaggcacgtggttttgacccccaagagaacctggactacctggatatggac
atgaaagggagcatcagtagtggggaaagcatcgaggttctgggcaccgagaagtcagcc
tctgtgttgtcgaaatctgacagccaggccagcctcaccgtgccattgagcccccatgta
gtccgtagcaaagcggtcagccacaggacaatcagcgaggacagcattgaagtcttaagc
acctgcccttctgaggccctcattcctgacgactttaaggccagctacccaagtgccatt
aatgaagaagaagcctatgcggataatgagggggccatccatttccgggcaagtgccagc
tcaccagaactggatgagactcaggagggcaacttggaaaatatcccatcccaaatagac
tccagctgctgtattggaaaagagagtgaaggccaattggtgcctctcccaaccccagcc
tacactctttctgatgaggatggtgtagtgagcattcccccacagcgctacattcagaag
gaccaggggctccacgtggactttggaatggaaaacactgacccttctccccgagacaac
agttgtgaaatgttcccagcttatgagctggatccaagctgccttctggctagccgagat
gttagtaagatgagcctggataactactcggataccactagctacatgggcagtgtggcc
tctgccagctcggacagaatcccctctgtacctcctgctggcctatcctctgagaggcac
aaaaagagagctggccagaatgccttaaaattcatccgccagtacccttttgcccaccca
gccatttactccctgctcagtgggaggacacttgtggtccttggtgaagatgaaaccata
gtcaggaagctggtaactgcactgtccatctttgttcccaactatggctgctatgccaag
ccggtgaagcactggatttcttcccctttgcatattatggattttcagaagtggaagctt
attggcctacaaagagtggcctctcctgccaatgtgggtaccctccataccctgagccgt
tacagccgctatacaagcatcctggacctggacagcaagaccctacgctgtcccctgtac
aggggcacactggtaccccgcctggctgaccatcgcactcagatcaagcggggcagcaca
tactaccttcacgtccagagcatgctcacccagctctgctccaaggcattcctctacacc
ttttgccaccacttgcatctgcccgcccacagtgaggagacacaagaagcagtggccagc
agacaaaccagcttcctaaagctaaccctgggactcgtgaatgaggacgtcagagtggtc
cagtacctggctgagctgttgaaactacattatatgcaggagtcacccggggccactcac
ccactgctcaggtttgactacgtccccagctttttgtacaaaatctaa
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