Mus pahari (shrew mouse): 110337427
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Entry
110337427 CDS
T05929
Symbol
Kdm2a
Name
(RefSeq) lysine-specific demethylase 2A
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
110337427 (Kdm2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mpah03000
]
110337427 (Kdm2a)
04121 Ubiquitin system [BR:
mpah04121
]
110337427 (Kdm2a)
03036 Chromosome and associated proteins [BR:
mpah03036
]
110337427 (Kdm2a)
Enzymes [BR:
mpah01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
110337427 (Kdm2a)
Transcription factors [BR:
mpah03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
110337427 (Kdm2a)
Ubiquitin system [BR:
mpah04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
110337427 (Kdm2a)
Chromosome and associated proteins [BR:
mpah03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
110337427 (Kdm2a)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
110337427 (Kdm2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
JmjC
Cupin_8
LRR_4
Cupin_1
Motif
Other DBs
NCBI-GeneID:
110337427
NCBI-ProteinID:
XP_021075998
Ensembl:
MGP_PahariEiJ_G0014001
LinkDB
All DBs
Position
1:complement(115716636..115795762)
Genome browser
AA seq
1161 aa
AA seq
DB search
MEPEEERIRYSQRLRGTMRRRYEDDGISDDEIEGKRTFDLEEKLHTNKYNANFVTFMEGK
DFNVEYIQRGGLRDPLIFKNSDGLGIKMPDPDFTVNDVKMCVGSRRMVDVMDVNTQKGIE
MTMAQWTRYYETPEEEREKLYNVISLEFSHTRLENMVQRPSTVDFIDWVDNMWPRHLKES
QTESTNAILEMQYPKVQKYCLMSVRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHN
LELYENWLLSGKQGDIFLGDRVSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFL
HSFNIPMQLKIYSIEDRTRVPNKFRYPFYYEMCWYVLERYVYCITNRSHLTKEFQKESLS
MDMELNELESGNGDEEGVDREARRMNNKRSVLTSPVANGVNLDYDGLGKACRSLPSLKKT
LSGDSSSDSSRGSHNGQVWDPQCSPKKDRQVHLTHFELEGLRCLVDKLESLPLHKKCVPT
GIEDEDALIADVKILLEELASSDPKLALTGVPIVQWPKRDKLKFPTRPKVRVPTIPITKP
HTMKPAPRLTPVRPAAASPIVSGARRRRVRCRKCKACVQGECGVCHYCRDMKKFGGPGRM
KQSCVLRQCLAPRLPHSVTCSLCGEVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEG
LLNEELPNCWECPKCYQEDSSEKAQKRKIEESDEEAVQAKVLRPLRSCEEPLTPPPHSPT
SMLQLIHDPVSPRGMVTRSSPGAGPSDHHSASRDERFKRRQLLRLQATERTMVREKENNP
SGKKELSEVEKAKIRGSYLTVTLQRPTKELHGTSIVPKLQAITASSANLRPNPRVLMQHC
PARNPQHGDEEGLGGEEEEEEEEEEDDSAEEGGAARLNGRGSWAQDGDESWMQREVWMSV
FRYLSRKELCECMRVCKTWYKWCCDKRLWTKIDLSRCKAIVPQALSGIIKRQPVSLDLSW
TNISKKQLTWLVNRLPGLKDLLLAGCSWSAVSALSTSSCPLLRTLDLRWAVGIKDPQIRD
LLTPPTDKPGQDNRSKLRNMTDFRLAGLDITDATLRLIIRHMPLLSRLDLSHCSHLTDQS
SNLLTAVGSSTRYSLTELNMAGCNKLTDQTLFFLRRIANVTLIDLRGCKQITRKACEHFI
SDLSINSLYCLSDEKLIQKIS
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atggaacctgaagaagaaaggattcggtacagccagagattgcgtggtaccatgcgtcgt
cgctatgaagatgatggcatttcagatgatgaaattgaggggaaaagaacttttgacttg
gaagagaagctccataccaacaaatataatgccaattttgttacttttatggagggaaaa
gattttaatgtagagtatatccagcggggtggcttgagagaccccctcattttcaagaat
tctgatggacttggaataaagatgccggatccagacttcacagtgaatgatgtcaaaatg
tgtgtggggagtcgtcggatggtggatgtcatggatgtgaacacacagaaggggattgaa
atgaccatggcacagtggacacgatactatgagactccagaggaagagcgagaaaaactc
tacaatgttatcagcctagagtttagccacaccaggcttgagaatatggtgcagcggcct
tccacggtggatttcattgactgggtagataacatgtggccaaggcacttgaaagaaagt
cagactgaatcaacaaatgccatcttagagatgcagtaccctaaagtgcaaaagtattgt
ctaatgagtgttcgaggctgctatactgacttccatgtggattttggaggtacttctgtt
tggtatcacatccaccaaggtggaaaggtcttctggctcatcccccctacagcccacaac
ctggagctgtacgagaattggctgctatcagggaaacagggagacatctttctgggtgac
cgggtgtcagattgccaacgaattgagctcaagcagggctataccttcgttattccctca
ggttggattcatgctgtgtatactcctacagacacattagtgtttggaggcaattttttg
catagtttcaacatccccatgcaattaaagatatatagcattgaagatcgaacacgggtt
ccaaataaattccgttacccattttactatgaaatgtgttggtatgtgttggagcgctat
gtatactgcataaccaaccgatcccacctaactaaggaatttcagaaagaatcccttagc
atggatatggaattaaatgagttggagtctggaaatggtgatgaggaaggggtggacaga
gaagcccgacgcatgaacaataagcgatctgtgcttaccagccctgttgctaatggagtc
aacctggattacgatggacttggcaaagcctgccgaagtcttccaagtctgaagaaaact
ttgtctggagactcatcctcagactctagccggggatcccacaatggccaagtttgggat
ccccaatgtagccctaaaaaggataggcaagtgcatctgacccattttgaacttgaaggt
cttcgatgtcttgtagataagttagagtcactgccactgcacaagaagtgtgtccctaca
gggatagaagacgaagatgctctgattgctgatgtaaagattttgctggaagaacttgcc
agtagtgatcccaagttagccctcactggagtccctatagtacagtggccaaaaagggat
aagcttaaattccctaccaggccaaaggtgagggttcctacaatccccatcacaaagcct
cacaccatgaagccagctccccgcttaacacctgtaaggcctgctgcagcctcccccatt
gtgtcaggagccaggcggagaagagtgaggtgcaggaaatgcaaagcttgtgtgcaagga
gaatgtggagtctgccactactgcagggacatgaagaaatttggtggacctggacgcatg
aagcaatcctgtgtccttcgacagtgcttagcacccagactgcctcattcagttacgtgt
tctctctgtggcgaagtagatcagaatgaagagacacaggactttgaaaagaaactcatg
gaatgctgcatctgcaacgagatagttcatcctggctgcctccagatggatggagagggg
ttgcttaacgaggaattgccaaattgctgggagtgtccaaagtgttaccaggaagacagc
tcggaaaaagcccagaagcggaaaatagaagagagtgatgaagaagctgtacaagccaaa
gtcctacggcccctgaggagctgcgaggagcccctcacacccccgcctcactcacctact
tccatgctgcagctcatccatgacccggtttctccccggggtatggtgactcggtcatcc
cctggggctggccccagcgaccaccacagtgccagccgtgatgaacgcttcaaacggcgg
cagttgctgcggctacaagccacagagcgcaccatggtacgggaaaaggagaacaatccc
agcggcaaaaaggagctgtctgaagttgagaaagccaagatccggggatcgtacctcact
gtcactctacagaggcccaccaaagagctccacgggacatccattgtgcccaagctgcag
gccatcacggcctcctctgccaaccttcgccctaacccccgggtgctaatgcagcactgc
ccagcccgaaacccccagcatggggatgaggaggggcttgggggagaggaggaggaagag
gaggaggaggaggaagatgacagtgcagaggaggggggtgcagccaggctgaatggccgg
ggcagttgggctcaggatggagacgaaagctggatgcagcgggaggtctggatgtctgtc
ttccgctacctcagccgcaaagaactttgtgaatgtatgcgagtgtgcaagacatggtat
aaatggtgctgtgataaacgactttggacaaaaattgacttaagtaggtgtaaggccatc
gtaccacaagctctcagtggtatcatcaagcggcagccagtaagcctcgacctcagctgg
actaacatctccaaaaagcagctgacatggctggtcaataggctgccaggattaaaagac
ctcctcctagcaggctgttcctggtctgcagtatctgccctcagcacctccagctgcccg
cttctcaggacccttgatcttcggtgggcagtaggaattaaagaccctcaaattcgggac
ttgctgactccacccacagataagccaggtcaagacaatcgaagcaaactccggaacatg
actgacttccgactggcaggccttgacatcacagatgctactctccgactcatcattcgc
cacatgccccttttgtctcgacttgacctcagtcactgcagtcaccttacagatcagtcc
tccaacctactaactgctgtcgggtcttccactcgatactcccttacagagctcaatatg
gcaggatgcaataaattgacagatcagaccctgttcttcctaaggcgaattgctaatgtc
accttgattgaccttcgaggatgcaaacagatcacgagaaaagcctgtgagcacttcatc
tcagacttgtccatcaacagcctctactgcctgtctgatgagaaactgatacagaagatt
agctaa
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