Mycolicibacillus parakoreensis: MIU77_12875
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Entry
MIU77_12875 CDS
T07959
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mpak
Mycolicibacillus parakoreensis
Pathway
mpak03030
DNA replication
mpak03410
Base excision repair
mpak03420
Nucleotide excision repair
mpak03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mpak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MIU77_12875 (ligA)
03410 Base excision repair
MIU77_12875 (ligA)
03420 Nucleotide excision repair
MIU77_12875 (ligA)
03430 Mismatch repair
MIU77_12875 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mpak03032
]
MIU77_12875 (ligA)
03400 DNA repair and recombination proteins [BR:
mpak03400
]
MIU77_12875 (ligA)
Enzymes [BR:
mpak01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MIU77_12875 (ligA)
DNA replication proteins [BR:
mpak03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MIU77_12875 (ligA)
DNA repair and recombination proteins [BR:
mpak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MIU77_12875 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MIU77_12875 (ligA)
MMR (mismatch excision repair)
DNA ligase
MIU77_12875 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MIU77_12875 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
Motif
Other DBs
NCBI-ProteinID:
ULN51780
UniProt:
A0ABY3TZL2
LinkDB
All DBs
Position
complement(2700559..2702631)
Genome browser
AA seq
690 aa
AA seq
DB search
MSSPEADPVPPDARRRWQDLADEVRDHQFRYYIRDAPIIADAEFDVLFTELVALEQQYPE
LRTPDSPTQLVGGAGFATDFTAAPHLERMLSLDDVFNTDELLSWDARVRAEIGGPTPYLC
ELKIDGVALALVYRDGQLDRAATRGDGRTGEDVTLNARTLDDVPQRLTPSDDYPLPAVLE
VRGEVFFRLADFEVLNAGLVAEGRSPFANPRNSAAGSLRQKNPAITARRPLRMICHGIGH
TEGFRPDTLHEAYLALRAWGLPVSDHTARVTDMGGVTDRIAYWGEHRHDVIHEIDGIVVK
VDDIAVQRRLGATSRAPRWAVAYKYPPEEATTALLDIRVSVGRTGRVTPFAYMSPVTVAG
STVALATLHNAAEVQRKGVLIGDTVVIRKAGDVIPEVLGPLVDARDGSERAFVMPTHCPE
CGTALAPAKEGDADIRCPNSRYCPAQLRERVFHVAGRGAFDIEALGYEAATALLEAEVIA
DEGDLFTLTAADLLRTELFTTKAGELSANGARLLANLDSAKDQPLWRVLVALSIRHVGPT
AARALATEFADLDLIMAADTDRLAAVDGVGPTIAAAITDWFAVEWHRAIVDKWRAAGVRM
VDQRDTSIARTCEGLTIVVTGALSGFSRDEAKEAIVARGGKAAGSVSKKTSYVVAGDAPG
SKYDKAVELGVPILDEDGFVALLADGPPAH
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
gtgagttcccccgaagccgacccggtaccgccggacgcgcggcgccgctggcaggacctc
gccgacgaggtgcgcgaccatcagttccgctactacatccgcgacgcgccgatcatcgcc
gacgccgagttcgacgtgttgttcaccgagctggtcgccctcgagcagcagtatccggag
ctgcggaccccggactcgccgacccagctggtcggcggtgccgggttcgccaccgacttc
accgccgccccgcacctggagcggatgctcagcctcgatgacgtgttcaacaccgacgag
ctgttgagctgggacgcgcgggtgcgcgccgagatcggcgggcccaccccgtatctgtgc
gagctgaagatcgacggggtggcgctggcgctggtctaccgcgacgggcagctggaccgc
gcggccacccgcggcgacgggcgcaccggggaggacgtgacgctcaacgcgcgcaccctc
gacgatgtcccgcagcggctgacccccagcgacgactacccgctgccggcggtgctggag
gtgcgcggcgaggtgttcttccgtctcgccgatttcgaagtgctcaacgccgggctggtc
gccgagggccggtcgccgttcgccaacccccgcaacagcgcggccggctcactgcggcag
aagaaccccgcgatcaccgcgcgccggccgctgcggatgatctgccacggcatcggccac
accgagggattccgcccggacaccctgcacgaggcctacctggcgctgcgggcctggggg
ctgccggtctccgaccacaccgcccgggtgaccgacatgggcggggtcaccgaccgcatc
gcctactggggcgagcaccgccacgacgtcatccacgagatcgacggcatcgtggtcaag
gtcgacgacatcgccgtgcagcgccggctgggggcgacctcgcgcgcgccgcgctgggcg
gtggcctacaaatacccgccggaagaggccaccacggccctgctcgacatccgggtcagc
gtggggcgcaccggccgggtcaccccgttcgcctacatgagcccggtcaccgtcgccggg
tccaccgtggcgctggcgaccctgcacaacgccgcggaggtgcagcgcaagggggtgctg
atcggcgacaccgtggtgatccgcaaggccggcgacgtcatccccgaggtgctcggtccc
ctggtcgacgcgcgcgacggcagcgaacgggcgttcgtcatgcccacccactgtcccgag
tgcggcaccgcgctggcgccggccaaggagggcgacgccgacatccgctgccccaactcc
cggtactgcccggcgcagttgcgcgagcgggtgttccacgtcgccgggcgcggcgccttc
gacatcgaggccctgggctacgaggcggccaccgcgctgctggaggcggaggtgatcgcc
gacgagggcgatctgttcaccctgaccgccgcggatctgctgcgcaccgaactgttcacc
accaaggccggggagctgtcggccaacggcgcccggctgctggcgaacctggacagcgcc
aaggaccagccgctgtggcgggtgctggtggcgctgtcgatccgccacgtcggcccgacc
gcggcgcgcgccctggccaccgagttcgccgacctggacctcatcatggccgccgacacc
gaccggctggccgccgtcgacggggtcggcccgaccatcgccgcggcgatcaccgactgg
ttcgccgtggagtggcaccgcgcgatcgtggacaaatggcgggcggccggggtgcggatg
gtcgaccagcgcgacaccagcatcgcgcgcacctgcgaggggctcacgatcgtggtcacc
ggcgcgctcagcgggttctcccgcgacgaggccaaggaggcgatcgtggcccgcggcggc
aaggccgccggctcggtgtcgaagaagacctcctatgtcgtcgccggcgacgccccgggc
tccaagtacgacaaggccgtcgagttgggggtgccgatcctcgacgaggacgggttcgtc
gcgctgctcgccgacgggcccccggcacactga
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