KEGG   Microbacterium paludicola: BO218_03385
Entry
BO218_03385       CDS       T04601                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
mpal  Microbacterium paludicola
Pathway
mpal03030  DNA replication
mpal03410  Base excision repair
mpal03420  Nucleotide excision repair
mpal03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mpal00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BO218_03385
   03410 Base excision repair
    BO218_03385
   03420 Nucleotide excision repair
    BO218_03385
   03430 Mismatch repair
    BO218_03385
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mpal03032]
    BO218_03385
   03400 DNA repair and recombination proteins [BR:mpal03400]
    BO218_03385
Enzymes [BR:mpal01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     BO218_03385
DNA replication proteins [BR:mpal03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BO218_03385
DNA repair and recombination proteins [BR:mpal03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     BO218_03385
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BO218_03385
   MMR (mismatch excision repair)
    DNA ligase
     BO218_03385
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BO218_03385
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 DNA_ligase_ZBD HHH_5 BRCT Nlig-Ia HHH PTCB-BRCT DUF4796_N
Other DBs
NCBI-ProteinID: APF33359
LinkDB
Position
complement(712219..714531)
AA seq 770 aa
MADGELTEITLDEARAESRDLIERITAARDAYYGRDAEVVDDATYDAWMRRLDELERLHP
QLQSQDSPTQTVGAAESTLFAPVTHAERMLSLDNVFSPEELTDWCVKAAASAGRPVRWLS
ELKIDGLAISLRYERGVLTSAATRGDGRVGEDVTVNALRVSGIPERLAGDGHPAIVEVRG
EIFIPVAEFTQLNALQAEMRDRVVEEARSRSRAFDEERARISAERRFPAFANPRNAASGG
LRQQLDKKTGLELEASEARVRSLRLYVHGIGAWQNPPVSSQSEIYALLAEWGLPISPHSQ
THESIEGVLGYVAHYGENRHSVEHELDGVVVKIDELALHDELGATSRAPRWAIAYKYPPE
QVNTKLLDIVVSVGRTGRATPFAVMAPARVAGSVVRQATLHNQDVVRAKGVLIGDTVVLR
KAGDVIPEVLGPVVELRDGTERAFVMPTNCPECGSPLRPAKEGDIDLRCPNARSCPAQVR
GRVEHVGSRGALDIEALGEVTAAALTQPLGEATPPLVTEAALFDLTLEQLVPIEVIVRDS
ETGEPRVDDKTGEPVRRAPFRRNPSGAEKKEGLTGPQPSAQALKLLDELEKAKTKELWRF
LVALSIRHVGPVAARALAQWFGSIAAIRAATRDELAAVEGVGGIIADSLIDWFEVDWHRE
IVERWEAAGARLEVPGHPGPGAAVVEGGVLEGITVVATGSLEGYTREGAQEAILAAGGKA
GSSVSKKTDFVAAGPGAGSKLAKAEQLGVRIIDAAQFRILVEQGPDALDS
NT seq 2313 nt   +upstreamnt  +downstreamnt
gtggcagacggagaactcaccgagatcaccctcgacgaggcgcgcgcagaatcccgtgac
ctgatcgagcggatcaccgcggcgcgcgacgcgtactacggtcgcgatgccgaggtcgtc
gacgatgcgacgtacgacgcgtggatgcgccgtctcgacgagctcgagaggctgcatccc
caactgcagtcgcaggactcgcccacccagacggtcggcgccgccgagtcgacgctgttc
gcgcccgtgacgcacgccgagcgcatgctgagcctcgacaacgtcttctcacccgaagag
ctgacagattggtgcgtcaaagcagcggcgtcggcggggcgcccggtgcgctggctctcg
gagctcaagatcgacggactcgcgatcagcctgcgctacgagcgcggcgtgctgacatct
gccgcgacgcgaggcgacgggcgggtcggcgaggacgtcaccgtcaacgcgctccgcgtg
agcggcatcccggagcgactagcaggagacgggcacccggcgatcgtcgaggtgcgcggc
gagatcttcatccccgtcgcggagttcacccagctcaacgcgctccaggccgagatgcgc
gatcgtgtggtcgaggaggcgcggtcccgctcccgcgcgttcgacgaggagcgcgcccgc
atcagtgccgagcgccgattcccggccttcgccaacccgcgcaacgccgcgagcgggggg
ctgcgccagcagctcgacaagaagacgggcctcgagctcgaagcgtccgaggcccgcgtc
cgttcgctccggctctacgtgcacggcatcggcgcgtggcagaacccgccggtgtcgtcg
cagagtgagatctacgcgctgctggccgagtggggtctgcccatcagcccgcactcgcag
acccacgagagcatcgagggtgtcctcggctacgtcgcgcactacggcgagaaccgccat
agcgtcgagcacgagctcgacggtgtcgtcgtcaagatcgacgaactggcgttgcacgac
gagctgggggcgaccagccgcgcaccccggtgggcgatcgcgtacaagtacccgccggaa
caggtcaacaccaagcttctcgacatcgtcgtgtcggtcggtcgtaccggtcgggccacg
cccttcgccgtcatggcaccggcccgcgtcgcgggcagcgtcgtgcggcaggcgacgttg
cacaatcaggacgtcgtccgggccaagggcgttctcatcggcgacaccgtcgtgctgcgg
aaggcgggcgacgtcatcccggaggtgctcggacccgtggtcgagctgcgcgacgggacc
gagcgcgcgttcgtcatgcccacgaattgccccgagtgcggctcgcccctgcgccccgcc
aaagagggcgacatcgacctccgctgtccgaacgcgcgctcctgcccggcgcaggtccgt
ggtcgcgtcgagcacgtcgggtctcgtggcgccctcgacatcgaggcactcggggaggtc
acggcagcagccctcacgcaaccgctgggcgaggccaccccgccgctggtcaccgaggct
gcgctgttcgacctgactctcgaacagctcgtcccgatcgaggtcatcgtccgtgactct
gagacgggtgagccgcgcgtcgacgacaagacgggcgagcccgtgcggcgcgctccgttc
cggcgcaacccttcgggcgccgagaagaaggagggactgaccggcccgcaaccgtccgcg
caggcactcaagctcctcgacgaactcgagaaggccaagaccaaggagctctggcggttc
ctcgtcgcgctcagcatccgccacgtcggtccggtggcggcgcgcgccctcgcgcagtgg
ttcggctcgatcgcagcgatccgcgccgcgacgcgggacgagctggcggccgtcgagggc
gtgggcggcatcatcgcggactctctgatcgattggttcgaggtcgactggcaccgcgag
atcgtggaacggtgggaagcggcgggtgcgcggctcgaagtgccggggcaccccgggccc
ggcgcagccgtcgtcgagggcggagtcctcgagggcatcaccgtcgtggcgacgggatcg
ctcgagggatacacccgcgaaggtgcacaggaggccatcctcgccgccggcggcaaagcc
gggtcgtccgtctcgaagaagaccgacttcgtcgcggcggggccgggcgcaggatccaaa
ctcgcgaaggccgagcagctcggcgtgcggatcatcgatgccgcgcagttccgcatcctc
gtcgagcagggaccggacgccctcgattcctga

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