Microbacterium paraoxydans: IZR02_07705
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Entry
IZR02_07705 CDS
T08796
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mpao
Microbacterium paraoxydans
Pathway
mpao03030
DNA replication
mpao03410
Base excision repair
mpao03420
Nucleotide excision repair
mpao03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mpao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IZR02_07705 (ligA)
03410 Base excision repair
IZR02_07705 (ligA)
03420 Nucleotide excision repair
IZR02_07705 (ligA)
03430 Mismatch repair
IZR02_07705 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mpao03032
]
IZR02_07705 (ligA)
03400 DNA repair and recombination proteins [BR:
mpao03400
]
IZR02_07705 (ligA)
Enzymes [BR:
mpao01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IZR02_07705 (ligA)
DNA replication proteins [BR:
mpao03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IZR02_07705 (ligA)
DNA repair and recombination proteins [BR:
mpao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IZR02_07705 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IZR02_07705 (ligA)
MMR (mismatch excision repair)
DNA ligase
IZR02_07705 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IZR02_07705 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
Nlig-Ia
PTCB-BRCT
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
QXE31353
LinkDB
All DBs
Position
1628536..1630851
Genome browser
AA seq
771 aa
AA seq
DB search
MPENISLEDARREAEELTTRILEAKDAYYGRDTSLVDDATYDGWMRRLEELERLHPELQG
QDSPTQMVGAAEATGLATIEHAERMLSLDNVFSIDELREWAQKTRAAAGRDVDWLTELKI
DGLAINLRYEDGVLTSAATRGDGRVGEIVTENALRLPEIPERLAGEGHPPIVEVRGEVFI
PVAAFERLNAAQAAFRDRAYTDALARWEARGGAKKPFDEEKARTAAARRFPAFANPRNAA
SGGLRQQIDKKDGLELEAGLLRIESLALYVHGIGAWTNPPVAAQSQVYELLAAWGLPTSP
HTKVCRSIDDVVAFVEHYGEHRHDIEHELDGIVVKVDELDLHDELGATSRAPRWAIAYKY
PPEEVQTKLLDIVVSVGRTGRATPFAVMAPAHVAGSVVRQATLHNKDVVKAKGVLIGDTV
VLRKAGDVIPEVLGPVVEKRDGTEREFVMPADCPECGTPLRAMKEGDIDLRCPNARSCPA
QVRGRVEHIGSRGALDVEALGEVTAAALTQPTSPAEPPLVTEAGLFALTLEQLVPIEVVV
RDAETGLPREDEDGLVKTRAPFRRNPTAAEKKSGLEGPQPSSQALTLLAELEKAKTKDLW
RLLVALNIRHVGPVAARALAQWFGSLDAIREASREELAAVEGVGGIIADSLLAWFDVDWH
QDIVRQWADAGVQWATPGHPGPGAAVAAGGVLEGLTVVATGSLDGYTRDGAQEAIIKAGG
KAASSVSKKTDFVAAGPGAGSKLAKAEELGIRILDAAQFHVLVTEGPAALD
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
gtgccggagaacatctcactggaagacgcccgccgcgaggcggaggagctgacgacccgc
atcctcgaggcgaaggacgcgtactacgggcgtgacacgtcgctcgtcgacgacgccacg
tacgacggctggatgcggcgcctggaagagctcgagcgcctgcatcccgagctgcaggga
caggactcgcccacccagatggtcggcgcggccgaggcgacggggctcgcgaccatcgag
cacgccgagcggatgctcagcctcgacaacgtcttctcgatcgacgagctgcgcgagtgg
gcgcagaagacacgagcggccgccgggcgcgacgtcgactggctgaccgagctcaagatc
gacggcctcgcgatcaacctgcggtacgaggacggcgtgctgacgtcggccgcgacccgt
ggcgacgggcgggtcggcgagatcgtcaccgagaacgcgctccgactccccgagatcccg
gaacggctcgccggggaggggcacccgcccatcgtcgaggtgcgcggagaggtcttcatc
cccgtcgccgcgttcgagcggctgaacgcggcgcaggcggcgttccgggaccgcgcgtac
acggacgccctcgcgcgctgggaggccaggggcggcgcgaagaagccgttcgacgaggag
aaggcgcgcaccgcggcggcacggcgcttcccggccttcgcgaatccccgcaacgcggcc
agcggcggcctgcgtcagcagatcgacaagaaggacggcctggagttggaagcgggtctg
ctgcgcatcgagtcgctcgcgctgtacgtgcacggcatcggtgcctggacgaacccgccg
gtcgcggcccagagccaggtctacgagctgctggccgcctgggggctgccgacgagtccg
cacacgaaggtgtgccgcagcatcgacgacgtcgtcgccttcgtcgagcactacggcgag
catcggcacgacatcgagcacgagctcgacggcatcgtggtcaaggtcgacgagctcgac
ctgcatgacgagctgggagcgacgagccgggcgccccgctgggcgatcgcctacaagtac
ccgccggaggaggtgcagacgaagctgctcgacatcgtcgtctccgtcggtcgcaccggt
cgcgcgacgcccttcgcggtgatggcgccggctcacgtcgccggatccgtggtccgtcag
gccacgctccacaacaaggacgtggtgaaggccaagggcgttctcatcggcgacaccgtg
gtgctgcgcaaggcgggcgacgtgatccccgaggtgctcggcccggtggtcgagaagcgg
gacgggaccgagcgggagttcgtcatgcccgccgactgccccgagtgcggcacgccgctg
cgcgccatgaaggagggggacatcgacctccggtgcccgaacgcccggtcgtgccccgcc
caggtgcgcggacgcgtcgagcacatcggctcgcggggagccctcgatgtcgaggccctg
ggcgaggtgacggcggcggcgctgacccagcccacgagtccggcggagcctcccctggtg
acggaggcgggcctgttcgccctgaccctggagcagctcgtgccgatcgaggtcgtcgtg
cgcgatgcggagacgggtctgccgcgcgaggacgaggacggcctcgtgaagacccgcgcg
ccgttccgacgcaacccgaccgcggccgagaagaagtcgggtctggagggtccgcagccg
tcttcccaggcgctgaccctgctcgcggagctggagaaggcgaagacgaaagacctctgg
cggcttctcgtcgcgctcaacatccgtcacgtcggaccggtcgcggcgcgggcgctcgcg
cagtggttcgggtcgctcgacgcgatccgggaggcatcgcgggaagagctcgccgcggtc
gagggcgtgggcggcatcatcgcggactccttgctcgcgtggttcgacgtcgactggcac
caggacatcgtccgccagtgggcggacgcgggcgtgcagtgggcgacgccgggtcacccc
ggccccggagcggcggtcgcggccgggggagtgctggagggcctcaccgtggtggcgacg
gggtccctcgacgggtacacccgcgacggggcgcaggaggcgatcatcaaggccggcgga
aaggcggcctcgagcgtgtccaagaagacggacttcgtggccgcggggccgggagccggc
tccaagctcgcgaaggcggaggagctcggcatccgcatcctcgacgccgcgcagttccac
gtcctggtcaccgaggggcccgcggcgctggactga
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