Mycolicibacterium parafortuitum: MPNTM1_04946
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Entry
MPNTM1_04946 CDS
T11082
Symbol
ligA
Name
(GenBank) DNA ligase A
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mpat Mycolicibacterium parafortuitum
Pathway
mpat03030
DNA replication
mpat03410
Base excision repair
mpat03420
Nucleotide excision repair
mpat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mpat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MPNTM1_04946 (ligA)
03410 Base excision repair
MPNTM1_04946 (ligA)
03420 Nucleotide excision repair
MPNTM1_04946 (ligA)
03430 Mismatch repair
MPNTM1_04946 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mpat03032
]
MPNTM1_04946 (ligA)
03400 DNA repair and recombination proteins [BR:
mpat03400
]
MPNTM1_04946 (ligA)
Enzymes [BR:
mpat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MPNTM1_04946 (ligA)
DNA replication proteins [BR:
mpat03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MPNTM1_04946 (ligA)
DNA repair and recombination proteins [BR:
mpat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MPNTM1_04946 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MPNTM1_04946 (ligA)
MMR (mismatch excision repair)
DNA ligase
MPNTM1_04946 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MPNTM1_04946 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
XCI63767
LinkDB
All DBs
Position
complement(5224913..5227036)
Genome browser
AA seq
707 aa
AA seq
DB search
MSPEATPDPESVLAEQADDALDADIRRRWQELADEVREHQFRYYVRDSPTITDAEFDEML
RALQALEDEYPELRTPDSPTQLVGGAGFATDFTPAEHLERMLSLDNVFDPEELAAWAARI
SSEIGQDAQYLCELKIDGVALALVYRDGRLERAATRGDGRTGEDVTLNARTIEDIPERLT
GTDEFPVPAVLEVRGEVFFRVADFEDLNAGLVAEGKAPFANPRNSAAGSLRQKNPAVTAR
RRLRMICHGLGHIEAPGGFPFKTLHDAYRALKAWGLPVSDHTAQVKGLDAVTERIAYWGE
HRHDVEHEIDGLVVKVDDVSLQRRLGATSRAPRWAVAYKYPPEEAQTKLLDIRVNVGRTG
RVTPFAYMEPVKVAGSTVGLATLHNGSEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVDLR
DGTEREFVFPTHCPECGTELAPAKEGDADIRCPNSRSCPAQLRERVFHVAGRGAFDIEGL
GYEAATALLQAGVIADEGDLFTLTAEDLLRTDLFTTQKGELSANGKRLLANLGKAKAQPL
WRVLVALSIRHVGPTAARALATEFGSLDAIEAASEEQLANTEGVGPTIAAAVIDWFTVDW
HRAIVDKWREAGVRMADERDTSIERTLEGLSIVVTGSLTGFSRDQAKEAIIARGGKAASS
VSKKTAYVVAGDAPGSKYDKAIELGVPVLDEDGFRRLLDDGPAAPED
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
gtgagtcccgaggcgaccccggatcccgagtcggtgctggccgagcaggccgacgatgct
ctcgacgccgacatccgccgtcggtggcaggagcttgccgacgaggttcgcgaacaccag
ttccgctactacgtccgtgattccccgaccatcaccgacgccgagttcgacgagatgctg
cgcgcgctgcaggcactcgaggacgagtatcccgagctgcgcacgcccgattcgccgacc
caactggtcggcggtgccggcttcgcgaccgacttcacccccgccgagcatctcgagcgc
atgctcagcctggacaacgtgttcgatcccgaggagctggcggcgtgggcggcgcggatc
agcagcgagatcggtcaggacgcgcagtacctgtgcgagctgaagatcgacggggtcgcg
ctggcgctggtgtaccgggacgggcggctggagcgcgcggcgacccgtggcgacgggcgc
accggcgaagacgtcacgctgaacgcgcgcacgatcgaggacatccccgaaaggctcacc
ggcacagacgagttcccggtgccggcggtgctcgaggtgcgcggtgaggtgttcttccgg
gtcgccgatttcgaggacctcaacgccgggctggtggccgagggcaaggcgccgttcgcg
aacccccgcaacagcgcggccgggtcgctgcgccagaagaaccccgcggtcaccgcgcgc
cgccggctgcggatgatctgccacgggctgggccacatcgaggcacccggagggttcccg
ttcaagacgctgcacgacgcctaccgcgcgctcaaggcgtggggcctgccggtgtccgac
cacaccgcgcaggtcaaaggcctcgacgcggtcaccgaacgcatcgcgtactggggtgag
caccgccacgacgtcgaacacgaaatcgacggtctggtcgtcaaagtcgacgatgtgtcg
ttgcagcgccgcctcggcgccacctcgcgggcgccgcgctgggcggtcgcgtacaagtat
ccgccggaggaggcccagaccaagctgctcgacatccgcgtcaacgtcgggcgcaccggc
cgggtgaccccgttcgcctatatggagccggtgaaggtcgccggttccaccgtggggctg
gccacgttgcacaacggctcggaggtcaaacgcaagggcgtgctgatcggcgacaccgtg
gtgatccgcaaggccggcgacgtgattcccgaggtgctcggcccggtcgtggatctgcgc
gacggcaccgagcgcgagttcgtgttcccgacccactgcccggaatgcggcaccgagctg
gccccggccaaggagggcgacgccgacatccgctgcccgaactcgcggagttgcccagcg
cagttgcgggagagggtttttcacgtcgcgggccgcggcgcgttcgacatcgagggcctc
ggctacgaagcggccaccgcgctgctgcaggccggtgtgatcgccgacgagggggacctg
ttcaccctcaccgccgaggatctgctccgcaccgatctgttcaccacgcagaagggcgag
ctgtcggccaacggcaaacggttgctggccaacctcggcaaggccaaggcgcaaccgctg
tggcgggtgctggtcgcgctgtcgatccgccatgtcgggccgaccgcggcgcgggcgctg
gccaccgagttcggcagcctggacgcgatcgaggcggcatcggaggaacagctcgccaac
accgagggtgtcggcccgacgatcgcggccgcggtgatcgactggttcaccgtcgactgg
catcgcgccatcgtcgacaagtggcgcgaggccggggtgcggatggccgacgaacgcgac
accagcatcgagcgcacgctggagggcctgtcgatcgtggtgaccggatcgctgacgggg
ttcagcagggatcaggccaaggaggccatcatcgccaggggcggcaaggcggcgagttcg
gtgtcgaagaagaccgcctacgtggtggccggggacgccccgggatcgaaatacgacaag
gccatcgaactcggggtgccggtgctcgacgaggacgggttccgcaggctcctcgacgac
ggtccggccgcgccggaggattaa
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integrated database retrieval system
