Mangrovibacter phragmitis: MPHASIOC01_002723
Help
Entry
MPHASIOC01_002723 CDS
T10640
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mphg Mangrovibacter phragmitis
Pathway
mphg03030
DNA replication
mphg03410
Base excision repair
mphg03420
Nucleotide excision repair
mphg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mphg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MPHASIOC01_002723 (ligA)
03410 Base excision repair
MPHASIOC01_002723 (ligA)
03420 Nucleotide excision repair
MPHASIOC01_002723 (ligA)
03430 Mismatch repair
MPHASIOC01_002723 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mphg03032
]
MPHASIOC01_002723 (ligA)
03400 DNA repair and recombination proteins [BR:
mphg03400
]
MPHASIOC01_002723 (ligA)
Enzymes [BR:
mphg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MPHASIOC01_002723 (ligA)
DNA replication proteins [BR:
mphg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MPHASIOC01_002723 (ligA)
DNA repair and recombination proteins [BR:
mphg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MPHASIOC01_002723 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MPHASIOC01_002723 (ligA)
MMR (mismatch excision repair)
DNA ligase
MPHASIOC01_002723 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MPHASIOC01_002723 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
BRCT_2
YfhE
Motif
Other DBs
NCBI-ProteinID:
XCE77692
LinkDB
All DBs
Position
complement(2827756..2829774)
Genome browser
AA seq
672 aa
AA seq
DB search
MEPIEQKLNQLRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELESAHPEKITPDSPTQ
RVGAAPLTAFTQVTHEVPMLSLDNVFDEESFLAFNKRIRDRLSDTQDVVYCCELKLDGLA
VSLLYENGVLVQAATRGDGTTGENITANVKTIRAIPLRLQGDNIPARVEVRGEVFLPQAG
FEKINDEARRTGGKVFANPRNAAAGSLRQLDSRITAKRPLTFFCYGVGVLEGGELPASHM
ARLQQFKAWGLPVSDRIRLCDSPEAVLAFYRHVEDIRPRLGFDIDGVVIKVDSLVQQEQL
GFVARAPRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIERLGLRIGDTVVIRRAGDVIPQVVNVVLSERPEETREVQFPAHCPVCGSDVERVEG
EAVARCTGGLICAAQRKEALKHFVSRRALDVDGMGDKIIDQLVEKEYIDNPADLFTLTAG
KLTGLDRMGPKSAQNVINALENAKQTTFARFLYALGIREVGEATAAGLAAHFGTLEALMA
ASVEQLQQVPDVGIVVATHVHNFFLEQRNRDVIEQLVHKAGISWPDPVVVKPEEIDSPFA
GKTVVLTGSLSQMSRDDAKARLAALGAKVSGSVSKKTDLVIAGEAAGSKLQKAQELGIEV
IDEAEMLRLLGV
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggaacctatcgaacaaaaactcaatcaactgcgaaccactcttcgccatcacgaatac
ctttatcatgttatggatgcaccggaaattccggatgctgaatatgacaggctgatgcgt
gaattacgtgaactggaaagcgctcaccctgaaaaaataacacctgattcacctacccag
cgagtcggggctgcgccgttaactgcttttactcaggttactcatgaagttcccatgctt
tcactggataacgtcttcgatgaagagagctttctggctttcaataaacgtatccgtgac
cgcctgagtgatacccaggatgtggtgtactgctgtgaactcaaactggatggtctggct
gtcagtttgctgtacgaaaatggtgtgctggttcaggcggcgacccgtggtgatggaact
accggggaaaacattaccgcgaatgttaaaactatccgggccattccgttgcgcttacag
ggcgacaacattcctgcgcgcgtggaagtgcgcggtgaagtcttcttgccacaggctggt
ttcgagaaaattaatgatgaagcccgccgcactggcgggaaagtgtttgctaacccgcgc
aatgcagctgcaggttcattgcgccagcttgattcccgtattaccgcgaagcggccactc
acattcttctgctacggtgtgggtgtacttgaaggtggtgagcttcctgcgagccatatg
gcgcgtttgcagcaattcaaagcctgggggctgccagtcagtgatcgcattcgtttgtgt
gactcaccggaagcggtgctggcgttttatcgtcacgtcgaagatattcgcccccgcctc
ggttttgatatcgatggcgtggtgattaaagtggattctttagtgcagcaagaacaactg
gggtttgtggcacgcgctccacgctgggctgtggcttttaaatttccggctcaggaacag
atgacgacggtgcgtgatgtcgagtttcaggtagggcgtacaggggctatcaccccggtg
gctcgccttgagccggtacaggttgccggggtgttggttagcaatgccacgctgcataat
gccgatgaaatcgaacgccttggcctgcgaattggcgatacagtggtgattcgccgtgca
ggcgatgtaattccacaggttgtgaacgtagtgctctctgagcgcccggaagaaacccgc
gaagtccagttcccggcgcactgcccggtatgtggttccgatgtggagcgggttgaaggt
gaagccgtagctcgttgcactggaggcttaatttgcgcagcacagcgtaaagaagcgctg
aaacatttcgtctcacgtcgcgcactggatgttgatggtatgggcgataaaattatcgac
cagttggtggaaaaagagtacatcgataatccggctgacctgttcacgctgactgccgga
aaacttaccggtcttgaccgtatggggccgaaatcggcgcaaaatgtgattaacgcactg
gagaacgctaagcaaaccacctttgcccgctttctgtatgcgttggggattcgcgaagtt
ggtgaagcaacagcggcaggtcttgcggctcatttcggcacactggaggcgttaatggcg
gcttcggttgagcagttacagcaagttccggatgtcggcattgtggttgccacacatgtg
cacaactttttcctggaacagcgcaaccgggatgtcattgaacaactggttcataaagcg
ggtattagctggcctgacccggtggtggttaagcctgaagagatagacagccccttcgcc
gggaaaaccgtcgtgcttactggctcgttaagccagatgtcccgtgatgatgccaaagct
cgcctggcggcactgggggctaaagtcagtggcagtgtttcgaagaaaactgacctggtg
attgccggtgaggcggcaggttctaagttgcagaaagcgcaggagctcggtattgaagtc
attgatgaagccgaaatgctccgtttattgggtgtataa
DBGET
integrated database retrieval system
