Mycolicibacterium phlei: MPHLCCUG_02023
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Entry
MPHLCCUG_02023 CDS
T04305
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mphl
Mycolicibacterium phlei
Pathway
mphl03030
DNA replication
mphl03410
Base excision repair
mphl03420
Nucleotide excision repair
mphl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mphl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MPHLCCUG_02023 (ligA)
03410 Base excision repair
MPHLCCUG_02023 (ligA)
03420 Nucleotide excision repair
MPHLCCUG_02023 (ligA)
03430 Mismatch repair
MPHLCCUG_02023 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mphl03032
]
MPHLCCUG_02023 (ligA)
03400 DNA repair and recombination proteins [BR:
mphl03400
]
MPHLCCUG_02023 (ligA)
Enzymes [BR:
mphl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MPHLCCUG_02023 (ligA)
DNA replication proteins [BR:
mphl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MPHLCCUG_02023 (ligA)
DNA repair and recombination proteins [BR:
mphl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MPHLCCUG_02023 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MPHLCCUG_02023 (ligA)
MMR (mismatch excision repair)
DNA ligase
MPHLCCUG_02023 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MPHLCCUG_02023 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
HHH_8
Motif
Other DBs
NCBI-ProteinID:
AMO60843
LinkDB
All DBs
Position
2087292..2089400
Genome browser
AA seq
702 aa
AA seq
DB search
MSAKATPDPETTLAEQAEDGPDADLRRRWQELADEVREHQFRYYVRDAPIISDAEFDALL
RELEALEEQHPELRIPDSPTQLVGGAGFATDFTPAEHLERMLSLDNAFTYDELTAWAGRV
KSEIGEDPWFLCELKVDGVALSLVYRDGRLERGATRGDGRTGEDVTLNARTIGDIPEKLT
PSDEFPIPKVLEVRGEVYFRVADFEELNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTAR
RKLRMICHGVGHAEGFRPATLHDAYRALKAWGLPTSEHTTRVKGIEAVAERIAYWGEHRH
EVDHEIDGVVVKVDDIAQQRRLGATSRAPRWAIAYKYPPEEAQTKLLDIKVNVGRTGRVT
PFAFMTPVKVAGSTVSQATLHNAQEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGT
EREFVMPTHCPECGAELAPAKEGDADIRCPNTRSCPAQLRERVFHVASRGAFDIEGLGYE
AGIALLQAGVITDEGDLFTLTEDDLLRTDLFRTKDGKLSANGRRLLANLGKAKEQPLWRV
LVALSIRHVGPTAARALATEYGSLDAIMAASEEELSAVEGVGPTIAAAVKEWFTVDWHLA
IVDKWRAAGVRMADERDENIPRTLEGLSIVVTGSLTNFSRDDAKEAIVARGGKAAGSVSK
KTAFVVAGDSPGSKYDKAVELGVPILDEDGFVRLLEHGPDGV
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgccaaggcaactccggatcccgagacgacactggctgagcaggccgaggacggt
cccgacgccgatctgcgccgccgctggcaggagctcgccgacgaggtgcgcgagcaccag
ttccgctactacgtgcgcgacgcgccgatcatctccgacgccgagttcgacgcgctgctg
cgcgagctggaggccctcgaggagcagcatcccgaactgcgcatcccggactcgccgacc
cagctggtcggcggcgccggtttcgccaccgacttcaccccggccgagcacctcgagcgg
atgctcagcctcgacaacgccttcacctatgacgagctcaccgcgtgggccgggcgcgtc
aagtccgagatcggcgaggacccgtggttcctgtgcgagctcaaggtcgacggcgtggcg
ctgtcgctggtctaccgcgacggcaggctcgagcgcggcgccacccgcggcgacggccgc
accggagaggacgtcaccctcaacgcccgcaccatcggcgacatccccgaaaagctcacg
cccagcgacgaattcccgatcccgaaggtgctcgaggtgcgcggcgaggtgtacttccgg
gtcgccgacttcgaggagctcaacgcgggtctggtggccgagggcaagccgccgttcgcc
aacccgcgcaacagcgccgccggatcgctgcggcagaagaaccccgcggtcaccgcgcgg
cgaaaactgcggatgatctgccacggcgtcggccacgccgagggtttccggcccgcgacg
ctgcacgacgcctaccgcgcgctcaaggcgtgggggctgccgaccagcgagcacaccacc
cgggtcaagggcatcgaggcggtcgccgagcgcatcgcctactggggtgagcaccgccac
gaggtcgaccacgaaatcgacggtgtggtggtcaaagtcgacgacatcgcgcagcagcgc
cggctcggcgccacctcccgcgcgccgcgctgggcgatcgcctacaagtacccgcccgag
gaggcgcagaccaagctgctcgacatcaaggtcaacgtcgggcgcaccggccgggtcacg
ccgttcgcgttcatgaccccggtgaaggtggccggctccacggtcagccaggcgacgttg
cacaacgcccaggaggtcaagcgcaagggcgtgctgatcggcgacaccgtggtgatccgc
aaggccggtgacgtcatccccgaggtgctcggcccggtggtcgatctgcgcgacggcacc
gagcgcgagttcgtgatgcccacccactgcccggagtgcggcgccgaactggcaccggcc
aaggagggcgacgccgacatccgctgcccgaacacccggtcctgcccggcgcagttgcgc
gagcgggtgtttcacgtcgccagccgcggcgccttcgacatcgagggcctgggctatgag
gccggcatcgcgctgctgcaggccggcgtcatcaccgacgagggcgacctgttcaccctc
accgaggacgacctgctgcgcaccgacctgttccgcaccaaggacggcaagctgtcggcc
aacggcagacggctgctggccaatctcggcaaggccaaggagcagccgctgtggcgggtg
ctcgtcgcgctgtccatccgccacgtcggaccgaccgcggcccgcgcgctggccaccgag
tacggcagcctcgacgcgatcatggccgcctccgaggaggaactgtccgccgtcgagggg
gtcgggccgacgatcgccgccgcggtcaaggagtggttcaccgtcgactggcatctggcg
atcgtcgacaagtggcgcgccgccggggtgcggatggccgacgagcgcgacgagaacatt
ccgcgcacgctggaggggctctcgatcgtcgtcaccgggtcgctgacgaacttctcccgc
gacgacgccaaggaggcgatcgtcgcgcgcggcggcaaggcggccgggtcggtgtcgaag
aagaccgcgttcgtcgtcgccggcgactcgccgggctccaagtacgacaaggccgtcgaa
ctcggagtgccgatcctcgacgaggacgggttcgtgcgactgctcgaacacggccccgac
ggggtctga
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