Mycoplasma phocoeninasale: HGG64_02945
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Entry
HGG64_02945 CDS
T08146
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mphn
Mycoplasma phocoeninasale
Pathway
mphn03030
DNA replication
mphn03410
Base excision repair
mphn03420
Nucleotide excision repair
mphn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mphn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HGG64_02945 (ligA)
03410 Base excision repair
HGG64_02945 (ligA)
03420 Nucleotide excision repair
HGG64_02945 (ligA)
03430 Mismatch repair
HGG64_02945 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mphn03032
]
HGG64_02945 (ligA)
03400 DNA repair and recombination proteins [BR:
mphn03400
]
HGG64_02945 (ligA)
Enzymes [BR:
mphn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HGG64_02945 (ligA)
DNA replication proteins [BR:
mphn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HGG64_02945 (ligA)
DNA repair and recombination proteins [BR:
mphn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HGG64_02945 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HGG64_02945 (ligA)
MMR (mismatch excision repair)
DNA ligase
HGG64_02945 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HGG64_02945 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
BRCT_2
HHH_5
DNA_ligase_ZBD
Nlig-Ia
DUF7342
Motif
Other DBs
NCBI-ProteinID:
QJG66639
UniProt:
A0A858U3L6
LinkDB
All DBs
Position
725657..727666
Genome browser
AA seq
669 aa
AA seq
DB search
MEDKQKNEIRKQVFELREKIDKWDKEYYDLDNPEVPDSVYDLEFNKLKKMEEQYAHYFSY
EEIKSSPTQKINSTPLSIFQKVYHESAMLSLNKAYSIDEIKKFIDNIAKITNEFSFFIEP
KIDGISISIKYKDGKLFQALTRGDGKVGEDVTENVLQIKDIPKTINYFNDLEVRGEIYLS
IEEFNNLNKDLESKGKTKLANPRNAAAGTLRQLNSEIVKERKLSAFLYYIVNPLDHNIET
MKQSFEFLNSLGFKISKEAKHVNSVEEIEEYIKEFKNIKQLLNYETDGIVIKLNEIKYYN
KLGSTSKFPHSAIAFKYEPDTAITVLKKIFITTGRTGLITYNALLEPVELSGSLVSYATL
NNFQYIEDLNLNENDLVYVKKAGEIIPCVIGLASKKDKDNSTRFKKFLFCPYCNFPLEDS
SSQLEQFCTNANCPEINRRKLIHFCSKDAMDITMLGEKNIELLLENHLLSTPADIYELKS
HKDELVNLARLGNKSVLKILDAIEETKTKSLERLIFGLSIKLIGAKVAKLIASEVKEFSN
FLSFDFLSLLKYNEIGDKVTNSIIEWIKIEDNAKLVNSLLAKGLNLKYINNAKNTKFQNF
SFVITGVLSKPRSYFEELIIVNGGLVKNSISSKTTYLLAGDDAGSKLAKANNLGIKIINE
EEFNELMQD
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggaagacaaacaaaaaaacgaaattcgtaaacaagtttttgaactaagagaaaaaatt
gataaatgagataaagaatattacgacttagataatcctgaagttcccgattcagtttat
gatcttgaatttaacaaacttaagaaaatggaagagcaatatgctcactatttttcttat
gaggagataaaatcttctccaacacaaaaaattaactcaacaccattaagtatttttcaa
aaagtttaccatgaaagtgctatgctttcattaaataaagcttactcgattgatgaaatc
aaaaaattcattgataatatcgcaaagataactaatgaatttagttttttcatagaacca
aaaatagatggtatttctatttcaattaaatataaagatggtaaactatttcaagctttg
acacgaggggatggtaaagttggcgaagacgtaacggaaaatgttttgcagataaaagat
attccaaaaactattaactattttaacgatttagaagttaggggagaaatttatctatca
attgaagaatttaacaatttaaataaagatttagaatcaaaaggaaaaacaaaactggcg
aatccaagaaacgcagctgctggaacattgaggcagctcaattctgaaattgttaaagaa
agaaaattatcggcatttttatactatatagttaatccgcttgatcacaacattgagaca
atgaaacaatcatttgaatttttaaattcactaggtttcaaaatttcaaaagaagcaaaa
catgtaaatagtgttgaagaaattgaagagtatataaaagaatttaaaaatattaaacaa
ttattaaattatgaaactgacggaatagtcataaaactaaatgaaataaaatattacaat
aagcttggatccacttcgaaatttccgcattcagctattgctttcaaatatgaaccggat
acagcgataacggttctaaaaaagatttttattaccacaggtagaacaggattaataact
tataatgccttacttgaaccagttgaattatctggtagcttagttagttatgccacacta
aataattttcaatatattgaagatttgaatctcaatgaaaacgatttagtatatgttaaa
aaagcaggggaaattattccgtgtgttattggccttgcgtcaaaaaaggataaggacaat
agtactcgatttaagaaatttttattttgtccttattgtaatttcccgctagaggattct
agttcacaacttgaacaattttgtactaatgctaactgtccagaaattaatcgtcgaaaa
ttaattcatttttgttcaaaagatgcaatggatatcaccatgcttggagagaaaaatatt
gagcttttgctagaaaatcatttgctttctactcccgccgatatatatgagcttaaaagt
cataaagatgaacttgtcaatttagcaagacttggtaacaaatcagttttaaaaatttta
gatgctattgaagaaacaaagactaaatcacttgaaagattaatttttggtttatcaatc
aaattgattggcgctaaagtagccaaattaattgcctcagaagttaaagagtttagtaac
tttctttccttcgattttttgagtttgctgaaatacaatgaaattggtgataaagtaaca
aactcaattattgaatgaattaaaattgaagataatgcaaaactagtaaatagtttatta
gctaaaggtctcaatttaaaatatatcaataatgctaaaaataccaaatttcaaaatttt
tcttttgtaattactggcgttctttcgaagccgagaagttactttgaagaattaattatt
gttaatggtggattggttaaaaattcaatttcctctaaaacaacttatttactagcaggt
gatgatgctggatcgaaacttgctaaagcaaacaatcttggaataaaaataattaatgaa
gaagaatttaatgaattaatgcaggattaa
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