Mycolicibacterium phocaicum: MPHO_15770
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Entry
MPHO_15770 CDS
T07283
Symbol
ligA
Name
(GenBank) DNA ligase A
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mphu
Mycolicibacterium phocaicum
Pathway
mphu03030
DNA replication
mphu03410
Base excision repair
mphu03420
Nucleotide excision repair
mphu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mphu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MPHO_15770 (ligA)
03410 Base excision repair
MPHO_15770 (ligA)
03420 Nucleotide excision repair
MPHO_15770 (ligA)
03430 Mismatch repair
MPHO_15770 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mphu03032
]
MPHO_15770 (ligA)
03400 DNA repair and recombination proteins [BR:
mphu03400
]
MPHO_15770 (ligA)
Enzymes [BR:
mphu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MPHO_15770 (ligA)
DNA replication proteins [BR:
mphu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MPHO_15770 (ligA)
DNA repair and recombination proteins [BR:
mphu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MPHO_15770 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MPHO_15770 (ligA)
MMR (mismatch excision repair)
DNA ligase
MPHO_15770 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MPHO_15770 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
BBZ54585
UniProt:
A0A7I7ZK84
LinkDB
All DBs
Position
complement(1606803..1608860)
Genome browser
AA seq
685 aa
AA seq
DB search
MSSPDPDVRRQWQELAEEVRGHQFRYYVKDAPIISDGEFDKLLGELQEIEERYPELRTPD
SPTQLVGGAGFATEFGEAQHLERMLSLDNAFNTDELTAWAARLSNELGGDLEYLCELKVD
GVALALVYRDGKLVRGATRGDGRTGEDVTLNARTITDVPEQLTGTDEFPVPAVLEVRGEV
YFRVEDFAALNASLVEEGKAPFANPRNSAAGSLRQKNPAVTARRRLHMICHGLGLTEGFE
PASLHDAYRALKAWGLPVSDHTTRVTGIAAVAERVAYWGEHRHDVDHEIDGLVVKLDDRT
LQRRLGATSRAPRWAIAYKYPPEEVTTKLLDIRVSVGRTGRVTPFAYMEPVTVAGSTVGL
ATLHNATEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGTEREFVMPATCPECGSTL
APSKEGDADIRCPNTRSCPAQLRERVFHVAGRGAFDIEGLGYEAATALLAAGVITDEGDI
FELTADELLRTNLFKTQKGELSANGARLLANLGKAKQQPLWRVLVALSIRHVGPTAARAL
AAEFGDLQAITEASEERLAAVEGVGPTIAAAVIDWFTVDWHRAIVDKWRAAGVRMADERD
ASIERNLEGLSIVVTGSLTGFSRDEAKEAILVRGGKAAGSVSKKTAYVVAGDAPGSKYDK
AVELGVPILDEDGFRRLLAEGPDAL
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
gtgagctcacccgatcccgacgtgcgccggcaatggcaggaactggccgaggaggtccgc
ggtcaccagttccgctactacgtcaaggacgcaccgatcatctccgacggtgagttcgac
aagctgctgggtgaactgcaggagatcgaagagcggtaccccgagctgcggacgccggat
tcgccgacgcagctggtcggcggcgccgggttcgcgaccgagttcggcgaggcgcagcac
ctggagcggatgctgtcgctcgacaacgcgttcaacaccgacgagctgacggcctgggcg
gcccggctgtccaacgagctgggcggcgatctcgagtacctctgcgaactcaaggtcgac
ggtgtcgcgctggcgctggtctaccgcgacggcaagctggtccgcggcgccacgcgcggc
gacggccgcaccggtgaggacgtcacgctcaacgcccgcaccatcaccgacgtccccgag
cagctgacgggcaccgacgaattcccggtgccggcggtgctggaggtccgcggcgaggtg
tacttccgcgtcgaggatttcgccgcgctcaacgccagcctcgtcgaggagggcaaggcg
ccgttcgccaatccgcgcaacagcgccgccgggtcgttgcggcagaagaatccggccgtc
accgcgcgtcgccggctgcacatgatctgccatggcctgggcctcaccgaaggcttcgag
cccgcgtcgctgcacgacgcctaccgcgcactcaaggcctggggcctgccggtgtccgac
cacaccacccgcgtcaccggcatcgcggcggttgccgaacgcgtcgcgtactggggcgag
caccgccacgacgtcgatcacgaaatcgacggtctggtggtcaaattggacgaccgcacg
ctgcagcgacgcctcggcgccaccagccgcgcgccgcggtgggccatcgcctacaagtat
ccgcccgaggaagtcaccaccaagctgctcgacatccgcgtgagtgtgggccgcaccggc
cgcgtcacgccgttcgcgtacatggagcccgtcaccgtggcggggtcgacggtcgggctc
gcgacgctgcacaacgccaccgaggtgaagcgcaagggcgtgctgatcggcgacaccgtg
gtgatccgcaaggccggcgacgtcatccccgaggtgctcggcccggtcgtcgatctgcgg
gacggcaccgaacgcgaattcgtcatgcccgcaacatgtccggagtgtggcagcacgctg
gcgccgtcgaaggagggtgacgccgacatccgttgccccaacacccggtcgtgccccgcg
cagctgcgcgagcgggtgttccacgtcgcgggtcggggtgccttcgatatcgagggcctc
ggctacgaggcggccaccgcgctgctggccgccggcgtcatcaccgatgagggcgacatc
ttcgagctcacggccgacgagctgttgcgcaccaacctgttcaagacccagaagggtgag
ctctcggccaacggcgcccggctgctggccaacctcggcaaggccaagcagcagccgctg
tggcgcgtgctggtggcgctgtccatccggcacgtcggcccgacggcggcccgggcgctg
gccgcggaattcggtgatctgcaagcgatcaccgaagcctccgaggaacgcctggcggct
gtcgagggcgtcggaccgaccatcgccgccgccgtgatcgactggttcaccgtcgactgg
caccgcgccatcgtcgacaaatggcgggccgcgggcgtgcggatggccgacgaacgcgac
gcaagcatcgagcggaacctggagggcctgtcgatcgtggtgacgggctcgctgacgggg
ttctcgcgggacgaggccaaggaggcgatcctggtccgcggcggcaaggcggccgggtcg
gtgtcgaagaagacggcctacgtggtggccggcgacgcgccaggatccaagtacgacaag
gccgttgaactcggcgtgccgattctcgacgaagacggcttccggcggttgctggcggag
gggccggacgcgctctga
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