Methylophaga pinxianii: LGT42_009005
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Entry
LGT42_009005 CDS
T08312
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mpin
Methylophaga pinxianii
Pathway
mpin03030
DNA replication
mpin03410
Base excision repair
mpin03420
Nucleotide excision repair
mpin03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mpin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LGT42_009005 (ligA)
03410 Base excision repair
LGT42_009005 (ligA)
03420 Nucleotide excision repair
LGT42_009005 (ligA)
03430 Mismatch repair
LGT42_009005 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mpin03032
]
LGT42_009005 (ligA)
03400 DNA repair and recombination proteins [BR:
mpin03400
]
LGT42_009005 (ligA)
Enzymes [BR:
mpin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LGT42_009005 (ligA)
DNA replication proteins [BR:
mpin03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LGT42_009005 (ligA)
DNA repair and recombination proteins [BR:
mpin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LGT42_009005 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LGT42_009005 (ligA)
MMR (mismatch excision repair)
DNA ligase
LGT42_009005 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LGT42_009005 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
Zn_ribbon_NUD
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
UPH44650
LinkDB
All DBs
Position
complement(1865049..1867061)
Genome browser
AA seq
670 aa
AA seq
DB search
MTVSTEIIDRAAQLRDLINRYNFLYYSEDDPEVTDAEYDRLFAELKQLETDYPELVTPDS
PTQRVGSAPLDKFKQITHAMPMLSLDNVFDEAELMAFNQRVLDRLNSNAVITYAAEPKLD
GLAISIRYENGLLVQAATRGDGAVGEDVTENVRTIRNIPLKLHGNNIPQVVEIRGEIYMP
KAGFEKLNQQRLANNEKLFVNPRNAAAGSLRQLDSSVTASRPLALFCYGLGEIQGMERPS
SHTEAMQIISEWGGAVCPDTKQLHGVDACLAYLHELGERRASLSYDIDGVVFKVDDSRLQ
ERLGFVSRAPRWAIAYKFPAQEETTQVVDIEIQVGRTGALTPVARLQPVFVGGVTVSNAT
LHNEDEIRRKDVRVGDTVVIRRAGDVIPEVVQVVKEKRPANTAEFVMPTHCPVCGAEVER
VEGEAVARCSGGLFCGAQRKEAIKHFASRKALDIDGLGDKLVEQLVDAELIKDPADLFYL
TKAQFSGLERMGDKSAENLVNALEHAKNTRFARFLYALGIREVGEATARSLALHFVELDK
LIHAKEDELIEIEDVGPVVAHHIYTFFQQTHNLDVIQRLLEAGVNWPEEKPVYADSELAG
KTIVLTGTLENLSRSEAKEKLLALGAKVAGSVSAKTDFVVAGRDAGSKLNKAQSLGIDVV
DEATLIQWIN
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgacggtttcaactgaaatcattgatcgagcagcgcagcttcgggacttaattaaccgt
tacaattttctctactacagcgaggatgatccggaagttaccgacgccgaatatgatcgt
ttgtttgctgaattaaaacagttggaaaccgattatcctgaactggttacgccggattct
ccgacacaacgggtagggtctgcaccattagataagttcaagcagattacgcatgcaatg
ccaatgttatcgctggataatgtgtttgatgaagctgagttgatggcgtttaatcagcgg
gttttggatcgcctgaatagcaatgctgtgattacctatgctgccgaaccgaaactggat
ggtctggccatcagtattcgttatgaaaatggattgttggttcaggccgctacccgtggt
gatggagctgtgggtgaggatgtcactgaaaatgtgcgaacgattcgaaatattccactg
aaacttcacggcaacaatatcccccaggtagttgaaatccgtggtgaaatttatatgcca
aaagcgggtttcgaaaagctgaatcaacagcgcctggccaacaatgaaaagttatttgtc
aatccacgaaatgccgctgccggttcgttaagacagctggactcttctgttacagccagt
cgtcctttggcattattttgctacgggctgggtgaaattcagggcatggaacgtccatcc
agtcatactgaagccatgcaaatcattagcgaatggggtggtgctgtctgtcccgatacc
aaacaacttcatggcgttgatgcctgtttggcttatttacatgagcttggtgaacggcgg
gccagtctttcatatgatattgatggggtggtatttaaagtcgatgacagtcgtttgcag
gaacgtttaggatttgtttcacgagcaccgcgttgggccatcgcttataagtttcccgcg
caggaagaaactactcaggttgttgatatcgaaattcaggtggggcgtaccggagcatta
acgcctgtcgcgcgattgcaaccggtttttgttggcggcgtcacggtcagtaatgccacc
ttgcacaatgaagatgaaattcggcgtaaagatgttcgggtgggtgacacagtagtgatt
cgccgtgctggggatgtgattccagaagtagtgcaggtggtgaaagaaaagcgtcctgcc
aataccgcggaatttgttatgccaacgcattgtcctgtatgcggagcagaagttgagcgt
gttgagggcgaagccgttgcccgttgcagtggcggtttattttgtggtgcccagcgtaag
gaagccattaagcattttgcttctcgcaaagcgctggatattgatgggttaggcgataaa
ctggttgagcaactggttgatgcagaattgattaaagatccagccgatttgttttatctg
accaaagcacagttttctggactggagcggatgggggataaatcagctgaaaatctggtg
aatgcattagaacatgccaaaaatacccgttttgcccgttttttatatgcattaggtatc
cgtgaagttggtgaagcgacggctcgttcactggcgctgcattttgttgaactggataaa
ttaatccacgccaaagaagatgagttgatcgaaattgaggatgtgggaccggtcgttgcc
catcatatttatacgttttttcagcaaacgcataatctggatgtgattcagcggttattg
gaggcaggggttaactggccggaagaaaaaccggtttatgctgactcggaattggctggt
aaaactattgttctgacaggcacgctagaaaatctttctcgtagtgaagctaaagaaaaa
ttattggcgttgggtgccaaagtggctggtagcgtttccgctaaaacggatttcgttgtg
gctggtagagatgccggttccaagctgaataaagcccaatcgcttggcattgatgtggtc
gatgaagcgaccctaatacagtggattaattaa
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integrated database retrieval system
