Pseudoduganella plicata: E1742_04960
Help
Entry
E1742_04960 CDS
T06563
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mpli
Pseudoduganella plicata
Pathway
mpli03030
DNA replication
mpli03410
Base excision repair
mpli03420
Nucleotide excision repair
mpli03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mpli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E1742_04960 (ligA)
03410 Base excision repair
E1742_04960 (ligA)
03420 Nucleotide excision repair
E1742_04960 (ligA)
03430 Mismatch repair
E1742_04960 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mpli03032
]
E1742_04960 (ligA)
03400 DNA repair and recombination proteins [BR:
mpli03400
]
E1742_04960 (ligA)
Enzymes [BR:
mpli01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E1742_04960 (ligA)
DNA replication proteins [BR:
mpli03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E1742_04960 (ligA)
DNA repair and recombination proteins [BR:
mpli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E1742_04960 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E1742_04960 (ligA)
MMR (mismatch excision repair)
DNA ligase
E1742_04960 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E1742_04960 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
BRCT_2
DZR_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QBQ35587
LinkDB
All DBs
Position
complement(1148840..1151173)
Genome browser
AA seq
777 aa
AA seq
DB search
MTKQAPAERAAWLTAELNRHLYAYHVLDAPTIPDAEYDKLFTELQQLEEAHPELVAPDSP
TRRVGAPPLGQFAAVTHAVPMLSLNNGFTEEDVENFDRRVREGLDAPEVEYAAEAKYDGL
AINLRYENGVFVQAATRGDGYTGEDVTANIRTVRTIPLRLHGKDLPAILDVRGEVLMFKA
DFNAMNERQRAAGQKEFVNPRNAAAGALRQLDSRITAQRKLRFFAYGIGELVGMDMPETH
AGLLDWYESLGLPVAKERDVVRGKDGLLSFYRGIGAGRPGMPYEIDGVVYKANRLQDQRA
LGFVSRAPRFALAHKFPAEEALTTVQAIEVQVGRTGAITPVARLVPVFVGGVTVTNATLH
NEDEVRRKDVRVGDTVIVRRAGDVIPEVLAVVLDKRPTPEPAAYVLPKTCPVCGSHVVRE
EGEAVARCSGGLTCAAQRKEAIRHFAGRRMMDIEGLGDRYIDSLVESNLVHSVADLYKLT
LDDLLKMKRLADERDGTTPETVKQGKVPTKWADNLLQAIEASKKPPLERMLFALGIRHVG
ESTGKTLADWLGQFALIRRAPAALLRVLPDIGGTVAESIADFFAEPKNQQAIDALLATGV
TPQGEHPPKAQLREKLEPVSLLAALGIPKLTEPRARQLVEGGATFESLASRRTFDIYGLP
AGVAAALEEWMAVPANRQALLALDALRNELLAQVPQAAAAEGAMTGKTFVLTGTLPTLSR
DAAGAMIEGAGGKVSGSVSKKTSYVVAGAEAGSKLAKAEELGVAILDEAGLLALLNT
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaacaggcaccggccgaacgggccgcatggctgaccgcggaactgaaccgccac
ctgtacgcctaccacgtgctggatgcgccaacgattcccgacgccgaatacgacaagctg
tttaccgagctgcagcagctggaagaagcgcaccccgagctggtggcgcctgactcgccg
acaaggcgcgttggcgcgccgccgctgggccagttcgccgccgtcacccatgcggtgccg
atgctgtcgctgaataacggttttacggaagaagacgtcgagaacttcgaccgccgcgtg
cgggaggggctcgatgcgccggaggtcgagtatgccgccgaggcgaaatacgacggcctg
gcgatcaacctgcgctacgagaacggcgtgttcgtgcaggccgccacgcgcggcgacggc
tacacgggcgaggacgtcacggccaatatccgcacggtgcgcacgatcccgctacgcctg
cacggcaaggacctgccggcgatcctggacgtgcgcggcgaagtgctgatgttcaaggcc
gacttcaatgccatgaacgagcgccagcgcgccgccgggcagaaggagttcgtcaatcct
cgcaacgcggcggcaggagcgctgcgccagctcgactcgcgcatcacggcgcaacgcaag
ctgcgcttcttcgcctacggcatcggcgaactggtgggcatggacatgccggagacgcat
gccggactgctggactggtacgagtcgctgggcctgcccgtggcgaaggaacgcgacgtc
gtgcgcggcaaggacggcctgctgtcgttctaccggggtatcggcgcgggccgccccggc
atgccgtatgagatcgacggcgtcgtctacaaggccaaccggctgcaggaccagcgcgca
ctgggcttcgtctcgcgcgcgccgcgctttgcgctggcccataaattcccggcagaagaa
gcgctgacgacggtgcaggccatcgaagtgcaggtgggccgcacgggggcgatcacgcct
gtcgcgcggctcgtgcccgtgttcgtcggcggcgtgaccgttaccaatgccacgttgcac
aacgaggatgaagtgcgccgcaaggacgtgcgcgtgggcgataccgtcatcgtgcggcgc
gccggcgatgtgattcccgaagtgctggccgtcgtgctggacaagcgccccacgccggaa
cccgccgcttacgtgctgccgaaaacgtgtcccgtctgcggctcgcacgtcgtgcgcgag
gaaggcgaagccgtggcgcgctgctccggcgggctgacgtgcgcggcgcagcgcaaggag
gcgatccgccactttgccggccggcgcatgatggacatcgaagggctgggcgaccgctac
atcgacagtctggtcgaatcgaacctggtgcacagcgtggccgacctgtacaagctgacg
ctggacgacctgctcaagatgaagcgcctggccgacgagcgtgacggcacgacgccggaa
acggtcaagcagggcaaggtgccgaccaaatgggccgacaacctgctgcaggcgatcgaa
gcgagcaagaagccaccactggaacgcatgctgttcgcgctgggcatccgccacgtgggc
gaatccacgggcaagacgctggccgactggctcgggcagtttgcgctgatccgccgggcc
ccggccgcgctgctgcgcgtgctgcccgatatcggcggcaccgtggcggaatcgattgcc
gacttcttcgccgaaccgaaaaaccagcaggccatcgatgcgctgctggcgaccggcgtc
acgccgcagggcgagcacccgccgaaagcgcagctgcgcgagaaactggaacccgtcagc
ctgctggccgcgctgggcatcccgaaactgacggagccgcgcgcgcgccagctggtggag
ggcggcgccacgttcgagtcgctggccagccggcgcacgttcgacatctacggcctgccg
gccggggtggcggcggcgctggaggaatggatggcggtgccggccaaccggcaggcgctg
ctggcgctggacgcgctgcgcaacgagctgctggcgcaggtgccgcaggcggcggccgcg
gagggcgcaatgaccggcaagacgttcgtgttgacggggaccttgccgaccctgagccgc
gatgccgccggtgcgatgatcgagggggcgggcggcaaggtgtccggctccgtgtcgaag
aagacgtcgtacgtcgtggccggcgcggaagcgggcagcaagctggccaaggccgaggag
ctgggcgtggccattctcgatgaagccgggttgctggcgctgttgaatacataa
DBGET
integrated database retrieval system
