Microbacterium plantarum: VC184_07225
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Entry
VC184_07225 CDS
T09931
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mpln
Microbacterium plantarum
Pathway
mpln03030
DNA replication
mpln03410
Base excision repair
mpln03420
Nucleotide excision repair
mpln03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mpln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VC184_07225 (ligA)
03410 Base excision repair
VC184_07225 (ligA)
03420 Nucleotide excision repair
VC184_07225 (ligA)
03430 Mismatch repair
VC184_07225 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mpln03032
]
VC184_07225 (ligA)
03400 DNA repair and recombination proteins [BR:
mpln03400
]
VC184_07225 (ligA)
Enzymes [BR:
mpln01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
VC184_07225 (ligA)
DNA replication proteins [BR:
mpln03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VC184_07225 (ligA)
DNA repair and recombination proteins [BR:
mpln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
VC184_07225 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VC184_07225 (ligA)
MMR (mismatch excision repair)
DNA ligase
VC184_07225 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VC184_07225 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
HHH_5
BRCT
Nlig-Ia
HHH
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
WRK18781
LinkDB
All DBs
Position
1500682..1502994
Genome browser
AA seq
770 aa
AA seq
DB search
MADGELPEITLDEARAESRDLIERITAARDAYYGRDAEVVDDATYDGWMRRLDELERVHP
ELQSQDSPTQTVGAAESTLFAPVTHAERMLSLDNVFSPEELTDWCVKAAASAGRPVRWLS
ELKIDGLAISLRYENGVLTSAATRGDGRVGEDVTVNALRVSGIPERLAREGHPAIVEVRG
EIFIPVAEFAQLNGLQAEMRDRMVEEARSRSRAFDEERARISAERRFPAFANPRNAASGG
LRQQLDKKTGLELEASEARVRSLRLYVHGIGAWQNPPVSSQSEIYALLAEWGLPISPHSQ
THESIDGVLGYVAHYGENRHSVEHELDGVVVKIDELALHDELGATSRAPRWAIAYKYPPE
QVNTKLLDIVVSVGRTGRATPFAVMAPARVAGSVVRQATLHNQDVVRAKGVLIGDTVVLR
KAGDVIPEVLGPVVELRDGTERAFVMPTNCPECGSPLRPAKEGDIDLRCPNARSCPAQVR
GRVEHVGSRGALDIEALGEVTAAALTQPLGDASPPLVTEAALFELTLDQLVPIEVIVRDS
ETGEPRVDEKTGEPVRRAPFRRNPSAAEKKDGLTGPQPSAQALKLLDELEKAKTKELWRF
LVALSIRHVGPVAARALAQWFGSIAAIRAATRDELAAVEGVGGIIADSLIDWFEVDWHSE
IVERWEAAGARLEVPGHPGPGAAVVEGGVLEGITVVATGSLEGYTREGAQEAILAAGGKA
GSSVSKKTDFVAAGPGAGSKLAKAEQLGVRIIDAAQFRLLVEQGPAALDS
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
gtggcagacggagaactccccgagatcaccctcgacgaggcgcgcgcagaatcccgtgac
ctgatcgagcggatcaccgcggcgcgcgacgcgtactacggtcgcgatgccgaggtcgtc
gacgatgcgacgtacgacgggtggatgcgtcgcctcgacgagctcgagcgagtgcatccc
gagctgcagtcgcaggactcgcccacacagacggtcggcgccgccgagtcgacgctgttc
gcgccggtcacgcacgccgaacggatgctgagcctcgacaacgtcttctcgcccgaagag
ctgaccgattggtgcgtcaaggcagcggcgtccgccggccgtcctgtccgttggctctcc
gaactcaagatcgacggactcgcgatcagcctgcgctacgagaacggcgtcctgacatct
gccgcgacacgcggtgacggacgcgtcggtgaggacgtcaccgtgaacgccctgcgcgtc
agcggcatccccgagcggctcgcgagagaggggcacccggccatcgtcgaggtgcgcggc
gagatcttcatccccgtcgccgagttcgcccaactcaacgggcttcaggccgagatgcgc
gatcgtatggtcgaggaggcgcggtcccgttcccgcgcgttcgacgaggaacgcgcgcgc
atcagcgccgagcgccgctttccggccttcgcgaaccctcgcaacgccgcgagcgggggc
ctgcggcagcagctcgataagaagacgggtctcgagctcgaagcctccgaggcccgcgtc
cgctcactccggctctacgtgcacggaatcggcgcgtggcagaacccgccggtgtcgtcg
cagagcgagatctatgcgctcttggccgaatggggtctgcccatcagcccgcactcgcag
acgcacgagagcatcgacggcgtgctcggctacgtcgcgcactacggcgagaaccgtcac
agcgtcgagcacgagctcgacggcgtggtcgtgaagatcgacgagctggcgctgcacgac
gagctgggcgcgaccagtcgcgcacctcgctgggcgatcgcctacaagtacccgccggaa
caggtcaacaccaagctgctcgacatcgtcgtgtcggtcggtcgcaccggccgggccacg
cccttcgccgtgatggcgcccgcccgcgtcgcgggcagcgtcgtgcggcaggcgacgctg
cacaatcaggacgtcgtgcgcgccaagggtgtcctcatcggcgacaccgtggtgctgcgg
aaggcgggcgacgtcatccccgaagtactcggacccgtggtcgagttgcgcgacggcacg
gaacgcgcgttcgtcatgcccacgaactgccccgagtgcgggtcgccgctgcgcccggcg
aaagagggcgacatcgacctccgctgccccaatgcgcgctcctgcccggcgcaggtccgc
ggccgcgtcgagcacgtcgggtcccgcggcgccctcgacatcgaggcgctcggagaggtc
acggcagccgccctgacgcagccgttgggcgatgccagcccgccgctggtgacggaggcc
gctctcttcgagctcaccctcgatcagctcgtgccgatcgaggtcatcgtccgcgactcc
gagacgggcgagccccgtgtggacgagaagacgggcgaacccgtgcggcgtgctcccttc
cggcgcaacccctcggctgcggagaagaaggatgggctgaccggaccgcaaccgtcggcg
caggcgctgaagctgctcgacgagctcgagaaggcgaagacgaaggagctgtggcggttc
ctcgtcgcgctcagcatccgccacgtcggtccggtcgcggcgcgtgccctcgcgcagtgg
ttcggctcgatcgccgcgatccgtgccgcgacgcgggacgaactggcggccgtcgagggc
gtgggcggcatcatcgcggattctctgatcgactggttcgaggtcgactggcacagcgag
atcgtcgagcgatgggaagccgccggggcgcggctcgaggtaccgggtcaccccggaccg
ggcgcagccgtggtcgagggcggagttctcgagggcatcaccgtcgtggcgacgggatcg
ctcgagggctacacccgcgaaggcgcccaggaggcgatcctcgccgccggtggaaaggcc
ggctcgtccgtctcgaagaagaccgacttcgtcgcggcggggccgggcgcaggatccaag
ctggccaaggcagaacagctcggtgtgcggatcatcgatgccgcccagttccgcctcctc
gtcgagcaggggccggcggccctcgattcctga
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