Marinomonas pontica: MACH16_23840
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Entry
MACH16_23840 CDS
T09751
Symbol
ligA_2
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mpon
Marinomonas pontica
Pathway
mpon03030
DNA replication
mpon03410
Base excision repair
mpon03420
Nucleotide excision repair
mpon03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mpon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MACH16_23840 (ligA_2)
03410 Base excision repair
MACH16_23840 (ligA_2)
03420 Nucleotide excision repair
MACH16_23840 (ligA_2)
03430 Mismatch repair
MACH16_23840 (ligA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mpon03032
]
MACH16_23840 (ligA_2)
03400 DNA repair and recombination proteins [BR:
mpon03400
]
MACH16_23840 (ligA_2)
Enzymes [BR:
mpon01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MACH16_23840 (ligA_2)
DNA replication proteins [BR:
mpon03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MACH16_23840 (ligA_2)
DNA repair and recombination proteins [BR:
mpon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MACH16_23840 (ligA_2)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MACH16_23840 (ligA_2)
MMR (mismatch excision repair)
DNA ligase
MACH16_23840 (ligA_2)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MACH16_23840 (ligA_2)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
AphA_like
DZR_2
tRNA-synt_1e
Motif
Other DBs
NCBI-ProteinID:
BDX03636
LinkDB
All DBs
Position
complement(2597763..2599799)
Genome browser
AA seq
678 aa
AA seq
DB search
MSQATNMTHQQMLDLIQQLNDYSYAYHVKDDPLVPDAVYDRDYRQLQDIEAEHPEWIQED
SPTQRVGEKPDSGFANVPHTVPMLSLDNAFDNESLSDFDQRIRKLIHAEQVTYCCEPKLD
GLAISLRYENGRLIRGVTRGDGLSGEDITSNIKTIYSVPLKLRTETPPAVLEVRGEIYMP
KEGFEKLNALAAEQGEKTFVNPRNAAAGSLRQLDPKITAKRPLVMCAYSIGYVEEWEQPE
SHYEGLLQLSEWGFRTNDLMAKAEGAQGCIDYYEMLNEKRADLSYDIDGIVYKVDRIALQ
NQLGFIARAPRWAIARKFPAQEEMTRITGVDFQVGRTGAITPVARLEPVFVGGVTVSNAT
LHNKDEIDRLGVKINDYVIVHRAGDVIPKVVQVVLDKRPEDATDVVFPEACPVCGSDLEQ
VEGEAIIRCTGGLVCGAQLKESLKHFVSRKAMDIDGLGDKLIEQLVDNELVKTPVDIFTL
HEKKDALLAMERMGQKSVEKLLASIETAKSTQFNRFIYALGIREVGEATARALTSYFTEL
DALMAADQEALVEVEDVGPVVAQHVRLFFEQELNRDTILGLLNAGVLWETKQSVSADDLP
LSGKTYVVTGSLSQFSRDQVKDKLQALGAKVSGSVSAKTDCLVAGEKAGSKLAKAQSLNV
PVIDETGVIDLLTQYGAI
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagcaacaaacatgacgcatcagcaaatgctggatttaattcagcaacttaat
gactacagctatgcctatcatgtgaaagacgatccccttgttcctgatgctgtgtacgat
cgtgattatcgtcaacttcaagatatagaagcagaacaccctgagtggattcaagaagat
tcacccactcaacgagtcggtgaaaaaccggacagtggttttgccaacgtgcctcatacg
gttcccatgttgtcactggacaatgcttttgataacgagtccttgtctgattttgatcag
cgtattcgaaaactgattcatgctgagcaggttacgtattgttgtgagcctaagctggat
ggcttagcgatcagtcttcgatacgaaaatggtcgtttaattcgcggtgttacccgcggc
gatggattgtcgggtgaggacattacctcgaatatcaaaacgatttattccgtaccgtta
aagcttcgaactgaaacaccacctgccgtattagaagtgcgcggtgaaatttatatgcca
aaggaagggtttgaaaaactgaacgcattggcggctgagcaaggtgaaaaaacctttgtt
aatcctagaaatgcggccgcaggcagcttacgtcagcttgatccaaaaataacggccaaa
cgtccccttgttatgtgtgcgtattctattggttatgtcgaagaatgggagcagccagag
agtcattacgaaggtctgctgcaattgagtgagtgggggtttcgaaccaatgacctaatg
gcaaaagccgaaggggcgcaaggctgtattgattattacgaaatgctaaatgaaaagcgt
gccgatttgtcttatgacatcgatggcatcgtgtacaaagtggatcgtatcgcgttgcag
aatcaattgggctttattgcgcgtgcgccgcgttgggccatcgcaagaaaatttcctgcg
caggaagaaatgacacggataacgggcgtagactttcaggttggtcgtactggcgccata
acacctgtagcacgcttagagcctgtgtttgtcggcggggtgacagtgtcgaatgcgact
ttgcacaacaaagatgaaattgaccgtttaggtgtgaaaataaacgactatgtgattgtt
catcgtgcgggggacgtgattcctaaagtggtgcaagttgtgctagataaacgccccgaa
gacgcaaccgacgtggtgtttcctgaggcgtgccctgtttgtgggtctgatttagaacaa
gtcgaaggcgaggccattattcgttgtacgggcggcttggtctgcggtgcgcagctgaag
gaatctctaaagcattttgtttctcgaaaggccatggacattgatggtcttggcgataaa
ttgatagaacaattagtggataatgaattggtgaaaaccccagttgatatcttcaccttg
catgagaagaaagacgctttgcttgccatggagcggatgggacaaaaatctgtcgagaag
ctgctagcgtctattgaaacggctaaaagcacacaatttaatcgatttatttatgcgttg
ggtattcgtgaagtgggagaggcaacggcgcgcgcactaaccagctactttacagagttg
gacgctcttatggcggcagaccaagaggctttggtcgaagtggaagatgtggggccggtt
gtggcgcagcatgtgcggctgttttttgagcaagaactgaatagggacaccattcttggc
ttattaaacgccggtgttctctgggagacaaaacagtccgtgtctgcggatgacttgcct
ctttctggcaaaacctatgtggtaaccggttcgttaagtcagttcagccgtgatcaggtc
aaagacaagcttcaagcgctaggtgcaaaagtgagcggttcggtttcggccaaaaccgat
tgtttggtggcgggtgaaaaggctggttcgaaactcgcaaaagcacaatcactcaatgtg
cctgtcatagatgagactggagtaatcgatttacttactcagtatggagcaatttaa
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integrated database retrieval system
