Marinobacter psychrophilus: ABA45_08230
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Entry
ABA45_08230 CDS
T03980
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mpq
Marinobacter psychrophilus
Pathway
mpq03030
DNA replication
mpq03410
Base excision repair
mpq03420
Nucleotide excision repair
mpq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mpq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABA45_08230 (ligA)
03410 Base excision repair
ABA45_08230 (ligA)
03420 Nucleotide excision repair
ABA45_08230 (ligA)
03430 Mismatch repair
ABA45_08230 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mpq03032
]
ABA45_08230 (ligA)
03400 DNA repair and recombination proteins [BR:
mpq03400
]
ABA45_08230 (ligA)
Enzymes [BR:
mpq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABA45_08230 (ligA)
DNA replication proteins [BR:
mpq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABA45_08230 (ligA)
DNA repair and recombination proteins [BR:
mpq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABA45_08230 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABA45_08230 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABA45_08230 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABA45_08230 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
RNA_ligase
RNA_pol_A_CTD
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AKO52415
UniProt:
A0A0H4I3Z2
LinkDB
All DBs
Position
1839573..1841684
Genome browser
AA seq
703 aa
AA seq
DB search
MSSVSTSVRDRVEQLRTTITDHNHHYYVLDDPQVPDAEYDRLFRELQAREAEYPELATTT
SPTQRVGSAVETNFAQVIHRIPMLSLDNAFSADELRDFDRRVRERLNRGKTAGESSTKEH
STEDHSTEGEGSKEERTIEYVCEPKLDGLAVSLHYQNGELVRAATRGDGYTGEDITANIR
TIASVPLTLRGGDFPQTVEVRGEVYMPRAGFDRLNQRLGGRGEKTFVNPRNAAAGSLRQK
KSSVTARRPLEMCAYSVAVSDESALPPTHWKGLQQVSEWGFRINPEMSLANGADQCLEAY
EALMAKRDRLPYEIDGIVFKVNRLDLQQQLGFVSRAPRWAIAQKFPAEEELTVVESVEFQ
VGRTGAITPVARLKPVFVGGATVSNATLHNMDEVRRLDLHIGDTVFIRRAGDVIPKVVKV
VQDKRPADAGVIELPAQCPACGSDVVQIEGEVIARCSGGLFCPAQRKEAIRHYASRKALD
IEGLGDKWVDILVDSEKVETIADLYRLRKADLIGLERMGDKSASNLIAAIDASRQPLLWR
FLYALGIREVGEATAKGLAGYFGSLEAIAEADGNALQAVSDVGPIVAGHLRSFFEQPHNQ
EILQSLKQAGVIWQTQEITAASMPLHGQTWVLTGTMEQMTRDQAKQKLEGLGAKVAGSVS
KKTSCVVAGEAAGSKLTKAQQLGVEVLSEQGLLDLLRGHDVEV
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgagctcagtcagtaccagcgtgcgtgaccgggttgagcagctgcgcacaaccattacc
gatcacaaccaccattattacgtgctcgatgatccgcaagttcccgacgccgagtacgat
cggctattccgtgaattgcaggcgcgagaagccgagtatccggaattggcgacgacaacg
tcgccgacccagcgtgtaggctccgcggtagaaaccaactttgcgcaagtgatccaccgt
atccccatgttgtctttggataatgccttcagcgccgacgagttacgggatttcgatcgc
cgcgtgcgtgagcgcctgaaccggggtaaaaccgcgggcgaaagcagcactaaggaacac
agcacggaggatcacagcacggagggagagggctcgaaggaagagagaactatagaatac
gtgtgcgaacccaagctcgacggcctggcggtcagtctgcattaccagaacggagagcta
gttcgcgctgccacccgcggcgatggttacaccggtgaagatattaccgccaatatacgg
accattgcgtctgtgcctctcaccctgcgcggtggtgattttccgcaaaccgtagaggtg
cgaggcgaggtgtatatgcctcgcgccggttttgaccggcttaaccagagactggggggg
cgtggtgagaaaacctttgtaaatccccgcaacgccgctgccggaagtctgcgccagaaa
aaatccagcgtgaccgccaggcgcccactggaaatgtgcgcctacagtgtagcggtttct
gacgaatcagcgctgccgcccacacactggaaaggtttgcagcaggtcagtgagtggggc
tttcgcatcaaccctgaaatgtctctcgccaatggggccgatcagtgccttgaggcctac
gaagcattgatggccaaacgcgacagactgccttatgaaatcgacggtattgtgttcaag
gtaaaccgtctggatcttcagcagcagttaggctttgtgagccgcgcgccgcgctgggcg
atcgcacaaaaattcccggctgaggaagagctgacggtggttgaaagcgtggagtttcag
gtcggccgtaccggcgctattacgcccgtggcacgcttaaaaccagtatttgtcggtggg
gctacggtatccaacgcaactttgcacaatatggacgaagtgcgacggctggatttgcac
atcggcgacaccgtgtttattcgccgcgccggtgatgttattccaaaagtcgtcaaagtg
gtgcaagacaaacggcccgccgatgccggggtaatagagcttccggcgcaatgcccggcg
tgcggctcagacgttgtacagattgaaggcgaagtgattgcccgttgttctggtggcctt
ttttgtccggctcagcgcaaagaagccatccgccattacgcatcacgtaaagcactcgac
atagaaggtctgggtgacaagtgggtggatattctggtggacagtgaaaaggttgaaact
attgccgatctgtatcggctgcgcaaagcagacctgatcgggctggagcgcatgggcgac
aagtctgcgagtaatttgattgctgctattgatgcctctcgtcagcccttattgtggcgg
tttctctacgcgctgggtattcgtgaagtgggcgaggccactgccaaaggccttgccggc
tactttggcagtctggaggctattgccgaagccgatggaaatgccctacaagcagtgtct
gacgttgggcccattgtggctgggcacctgcgcagtttttttgagcagccccataaccag
gaaattctgcagagtttgaaacaggccggtgtgatctggcaaacccaggaaattaccgcg
gccagtatgcctctgcatgggcaaacctgggtactgaccggaactatggagcagatgacc
cgcgaccaggcaaaacaaaagctagaaggtttgggcgctaaagtggcaggcagcgtgtcg
aaaaagacgtcgtgcgtggtggccggtgaagcggcgggttccaaactgaccaaagcgcag
cagttaggcgttgaggttttgagtgagcagggtctattagacctgctgcgtgggcatgac
gtggaggtctga
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