Mycolicibacterium psychrotolerans: MPSYJ_45510
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Entry
MPSYJ_45510 CDS
T07008
Symbol
ligA
Name
(GenBank) DNA ligase A
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mpsc
Mycolicibacterium psychrotolerans
Pathway
mpsc03030
DNA replication
mpsc03410
Base excision repair
mpsc03420
Nucleotide excision repair
mpsc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mpsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MPSYJ_45510 (ligA)
03410 Base excision repair
MPSYJ_45510 (ligA)
03420 Nucleotide excision repair
MPSYJ_45510 (ligA)
03430 Mismatch repair
MPSYJ_45510 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mpsc03032
]
MPSYJ_45510 (ligA)
03400 DNA repair and recombination proteins [BR:
mpsc03400
]
MPSYJ_45510 (ligA)
Enzymes [BR:
mpsc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MPSYJ_45510 (ligA)
DNA replication proteins [BR:
mpsc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MPSYJ_45510 (ligA)
DNA repair and recombination proteins [BR:
mpsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MPSYJ_45510 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MPSYJ_45510 (ligA)
MMR (mismatch excision repair)
DNA ligase
MPSYJ_45510 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MPSYJ_45510 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
BBX71090
UniProt:
A0A7I7MH24
LinkDB
All DBs
Position
complement(4658733..4660841)
Genome browser
AA seq
702 aa
AA seq
DB search
MSPEASPDAEAVLAEQAGEGPAADVRRSWQELAEQVREHQFRYYVRDAPVISDAEFDTLL
RRLQALEDEHPELRTPDSPTQLVGGAGFATDFTPAGHLERMLSLDNVFDPEELGAWAARI
AGEIGPDADYLCELKIDGVALALVYRDGRLVRAATRGDGRTGEDVTLNARTIEDVPEKLS
ATDEFSLPSVLEVRGEVFFRVADFEELNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTAR
RRLRMICHGLGHAEGFAPASLHDAYRALAAWGLPVSDHTAKVKGLAAVTERIAYWGEHRH
DVEHEIDGVVVKVDETALQRRLGSTSRAPRWAVAYKYPPEEATTKLLDIRVNVGRTGRVT
PFAYMEPVKVAGSTVGLATLHNASEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGS
EREFVMPTHCPECGTELAPAKEGDADIRCPNSRTCPAQLRERVFHVAGRGAFDIEGLGYE
AAIALLQAGVITDEGDLFTLTADDLLRTELFTTQKGEVSANGKRLLANLGKAKAQPLWRV
LVALSIRHVGPTAARALATEFGSLEAIMAASEEQLAATEGVGPTIAAAVTDWFTVDWHRA
IVDKWRAAGVRMADERDASIERTLEGMSIVVTGSLTGFSRDDAKEAIIARGGKAASSVSK
KTAYLVAGDAPGSKYDKAIELGVPVLDEDGFRRLLDGGPDAV
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtgagtcccgaggcgagccccgacgcggaggcagtactggccgagcaggccggtgaaggc
ccggccgccgatgtgcgccgcagctggcaggagctcgccgaacaggtgcgcgaacatcag
ttccgctattacgtgcgcgacgccccggtgatctccgacgcggagttcgacacgctgctg
cgccgtctgcaggcactcgaggacgagcatcccgagttgcgcacccccgactcgccgacc
cagctggtcggcggcgccgggttcgccaccgatttcacaccggccgggcacctggaacga
atgctcagcctggacaacgtcttcgatcccgaggagttgggtgcctgggccgcgcgcatc
gcaggcgagatcggcccggacgccgactatctgtgtgagctgaagatcgacggcgtggcg
ctggctctggtgtaccgcgacggccggctggtccgtgccgccacccgcggcgacggccgc
acaggcgaggacgtcaccctgaacgcccgcaccatcgaggatgtgcccgagaagctcagt
gccacagacgagttttcgctgccctcggtgctcgaggtgcgtggcgaggtgttcttccgg
gtggccgacttcgaggagctcaacgcgggtctggtcgccgagggcaagcctccgttcgcc
aatccacgcaacagtgccgccgggtcgctgcgccagaagaaccctgcggtgacggcgcgg
cgccggttgcggatgatctgccacggactcggccacgccgagggcttcgcgccggccagc
ctgcacgacgcctaccgggcgctggcggcgtgggggctgccggtgtcggatcacaccgcg
aaggtcaagggcctggcagcggtcaccgaacgcatcgcctactggggtgagcaccggcac
gacgtcgagcacgagatcgacggcgtcgtcgtcaaggtcgacgagacggcgctgcagcgt
cggctcggctcgacgtcgcgggcgccccgctgggcggtggcctacaagtacccgcccgag
gaggcgaccaccaagctgctcgacatccgggtcaacgtgggccgtaccgggcgggtcacg
ccgttcgcctacatggagccggtcaaggtcgcgggttccacggtgggcctcgcgacgctg
cacaacgcctcggaggtcaagcgcaagggtgtgctgatcggcgacaccgtggtgatccgc
aaggcgggcgacgtcatccccgaggtgctcggcccggtggtcgacctgcgcgacggcagc
gaacgcgagttcgtcatgccgacgcactgtccggagtgcggcaccgaactggcacccgcc
aaggagggcgacgccgacatccgctgccccaactcgcgcacctgcccggcgcagctgcgg
gagcgggtgttccacgtcgcgggccgcggggcgttcgacatcgagggactggggtacgag
gcggcgatcgcgctgcttcaggccggcgtcatcaccgacgagggtgacctgttcaccctc
accgccgacgatctactgcgcaccgagctgttcaccacgcagaagggcgaggtgtcggcc
aacggcaagcggctcctggccaacctcggcaaggccaaggcgcagccgttgtggcgggtg
ctcgtcgcgctgtccatccggcacgtcgggccgacggcggcgcgcgcccttgccaccgag
ttcggcagcctggaggccatcatggcggcctcggaggagcagctcgccgccaccgagggc
gtcggcccgacgatcgcggcggcggtcaccgactggttcaccgtcgactggcaccgcgcg
atcgtcgacaagtggcgggcggccggggtccggatggccgacgagcgcgacgccagcatc
gaacgcaccctggagggcatgtccatcgtcgtgaccggatcgctgaccgggttcagccgc
gacgacgcgaaggaggcgatcatcgcgcgcggcggcaaggcggccagttcggtgtcgaag
aagaccgcgtacctggtcgccggcgacgcgccgggctcgaagtacgacaaggcgatcgaa
ctcggcgtcccagtgctcgacgaggacgggttccggcgtctgctcgacggcggccccgac
gccgtctag
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integrated database retrieval system
