Mycobacterium pseudoshottsii: MPSD_41450
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Entry
MPSD_41450 CDS
T07300
Symbol
ligA
Name
(GenBank) DNA ligase A
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mpse
Mycobacterium pseudoshottsii
Pathway
mpse03030
DNA replication
mpse03410
Base excision repair
mpse03420
Nucleotide excision repair
mpse03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mpse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MPSD_41450 (ligA)
03410 Base excision repair
MPSD_41450 (ligA)
03420 Nucleotide excision repair
MPSD_41450 (ligA)
03430 Mismatch repair
MPSD_41450 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mpse03032
]
MPSD_41450 (ligA)
03400 DNA repair and recombination proteins [BR:
mpse03400
]
MPSD_41450 (ligA)
Enzymes [BR:
mpse01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MPSD_41450 (ligA)
DNA replication proteins [BR:
mpse03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MPSD_41450 (ligA)
DNA repair and recombination proteins [BR:
mpse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MPSD_41450 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MPSD_41450 (ligA)
MMR (mismatch excision repair)
DNA ligase
MPSD_41450 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MPSD_41450 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
BBA89513
LinkDB
All DBs
Position
complement(4541125..4543188)
Genome browser
AA seq
687 aa
AA seq
DB search
MTPEVLRQWQELAEQVREHQFRYYVRDAPVITDAEFDELLRRLEALEEQYPELRTPDSPT
QLVGGAGFATEFEPVEHLERMLSLDNAFNTEELTAWAGRIHADVGDNAAYLCELKIDGVA
LSLVYEGGRLTRASTRGDGRTGEDVTLNARTIEDVPERLSHSEDHRMPEVLEVRGEVFFR
VADFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHTEGFRPAT
LHQAYLALQAWGLPVSQHTTLVADLAGVQERIDYWGEHRHEVDHEIDGVVVKVDDVALQR
RLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGSTVAQATL
HNASEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGSEREFVMPTTCPECGAPLAPE
KEGDADIRCPNTRSCPGQLRERVFHVSSRNALDIEMLGYEAGAALLSARVIGDEGDLFGL
TEEELLRTDLFRTKAGDLSANGRRLLANLDKAKAAPLWRVLVALSIRHVGPTAARALATE
FGSIDAIVAATTEQLAAVEGVGPTIASAVSEWFTVDWHREIVEKWRAAGVRMADERDDSV
PRTLAGVTVVVTGSLPGFSRDEAKEAIVTRGGKAAGSVSKKTSYVVAGDAPGSKYDKAVE
LGVPILDEDGFRKLLEQGPPAEVGEPT
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgactcctgaggtgttgcggcagtggcaggaactggccgagcaggtgcgtgaacaccag
tttcgctactacgtgcgcgacgcgccggtgatcaccgacgcggaattcgacgaattgctg
cgccggctggaggcgctcgaagaacagtatcccgagctacgcacacccgattctcccact
cagctggtcggtggcgccggtttcgcgaccgagttcgaacccgtcgagcatctggaaaga
atgctcagcctcgacaacgcgttcaacaccgaggaactcaccgcctgggccggccgcatc
cacgccgatgtcggcgacaatgcggcctatttgtgtgagctcaagattgacggcgtggcg
ctgtcgctggtgtacgaaggggggcggctgacccgggcctccacccggggcgacggccgc
accggcgaagatgtcacgctcaatgcccgcaccatcgaggacgttccggaacggctttcc
cacagcgaggaccaccgcatgcccgaggtgctcgaggtccgcggtgaggtgttctttcgg
gtggctgatttccaggcgctcaacgcgagcttggtcgaggagggcaaggcaccgttcgcc
aacccccgcaacagcgcggccgggtcgttgcggcaaaaggacccggcggtcacggcccgg
cgcagattgcggatgatctgccatgggctgggccacaccgaaggctttcgcccggcgacg
ctgcaccaggcctacctggcgttgcaggcctgggggctgccggtttctcagcacaccacg
ctggtcgccgacctggccggggtacaggagcgcatcgactactggggcgagcatcgccac
gaggtcgaccacgaaatcgacggcgtggtggtcaaagtcgacgatgtcgccctgcagcgg
cggctcggttccacctcacgggcaccgcgctgggcgatcgcgtacaagtacccgcccgag
gaagcccagaccaagctgctcgatattcgggtcaacgtcggccgaaccgggcgagttacg
ccgtttgcgttcatgacgccggtgaaggtcgcgggctcgacggtggcacaagccaccttg
cacaacgcgtcggaggtcaagcgcaagggcgtgctgatcggcgacacggtggtgatccgc
aaggccggtgacgtgatccccgaagtgttgggtccggtggtcgacctccgtgatgggtcc
gaacgcgaattcgtcatgcccacaacgtgtccggagtgcggcgcgccgctggctccggag
aaggagggcgacgccgacatccgctgtccgaatacccgcagctgtccggggcagttgcgg
gagcgggtttttcatgtctccagccgcaatgccctcgacatcgagatgctgggctatgag
gctggcgccgcgctgctttcggcgcgggtgatcggcgatgaaggcgacctgttcgggctc
accgaggaagagctgcttcgcaccgacctgttccgcaccaaggccggtgacttgtccgcc
aacggccggcggctactggccaatctggacaaggcgaaggcggcgccactatggcgcgtg
ctggtggcgttgtccatccgccatgtcggaccgacagcggcacgcgcactggccaccgag
ttcggcagcatcgatgcgatcgtcgccgcgaccaccgaacagttggccgccgttgaggga
gtgggaccgacgatcgcctccgccgtttcggagtggttcaccgtcgactggcaccgcgag
atcgtcgagaagtggcgggccgccggtgtgcggatggccgatgagcgcgacgacagtgtg
ccgcgcacactggccggggtaaccgtggtggtcaccggctcgttgcccggattctcacgg
gacgaggccaaggaggcgatcgtgacccgtggcggcaaagccgccggttcggtatcgaaa
aagacctcctacgtcgtcgccggtgacgcacccggctcgaagtacgacaaggcggtcgaa
ctcggcgtgcccatcctcgacgaagatgggtttcgaaagttgttggagcagggccccccg
gccgaagtgggggagccgacctag
DBGET
integrated database retrieval system
