Mycoplasmopsis pulmonis: MYPU_3890
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Entry
MYPU_3890 CDS
T00055
Symbol
MYPU_3890
Name
(GenBank) DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mpu
Mycoplasmopsis pulmonis
Pathway
mpu03030
DNA replication
mpu03410
Base excision repair
mpu03420
Nucleotide excision repair
mpu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mpu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MYPU_3890 (MYPU_3890)
03410 Base excision repair
MYPU_3890 (MYPU_3890)
03420 Nucleotide excision repair
MYPU_3890 (MYPU_3890)
03430 Mismatch repair
MYPU_3890 (MYPU_3890)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mpu03032
]
MYPU_3890 (MYPU_3890)
03400 DNA repair and recombination proteins [BR:
mpu03400
]
MYPU_3890 (MYPU_3890)
Enzymes [BR:
mpu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MYPU_3890 (MYPU_3890)
DNA replication proteins [BR:
mpu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MYPU_3890 (MYPU_3890)
DNA repair and recombination proteins [BR:
mpu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MYPU_3890 (MYPU_3890)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MYPU_3890 (MYPU_3890)
MMR (mismatch excision repair)
DNA ligase
MYPU_3890 (MYPU_3890)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MYPU_3890 (MYPU_3890)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
BRCT_2
PTCB-BRCT
Nlig-Ia
RuBisCO_small
RNA_ligase
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
CAC13562
UniProt:
Q98QH2
LinkDB
All DBs
Position
456736..458775
Genome browser
AA seq
679 aa
AA seq
DB search
MSLSKSKVKSKIKELNEKLKLYNHHYYNKNESLVSDEYYDAKLLELENIRDNFPEEYNQV
FQKDFSKSVLEKVNHLDEQDVKLKKEKHQKLMLSLNKAYSFEDLERYTNRINTFVGNNHQ
YILQEKIDGVSISLYYENGILTKALTRGDGIYGENVTHNALNIKDIPKTINIKENIELRG
EIFFSLKLFESLKNEFLDKQDGTKNKKWNTPRNKASGILKSLKTTDESSWLSCFIYEVVS
PENFNLKTQKQLFDFLKIQGFNLPKFEFIENENLIENFITNFKFEDDQRDYEIDGLVIKL
NDLSLYDLLGKTSKFFHHSIAYKFRKKFVMTKIEDIFVTVGRTGLITYNAKLQEVVLNGS
KIKAATLHNYEYIKNIKINIGDKVYIEKAGEIIPRVVKLVSPKNDQNYFSPIEFCPSCKN
KLSWSENMLNQFCLNPDCIEKKIQKLKYFVSKDGMEIQELGGKKIELFFAKGWVKKIEDI
YNLKNNYDDLLKLENFQEHSVNVLLHKIEESKDVYTWKLIAALGIKNIGKKLAKSLVKII
FENDQKNLLSLLEFNYDELEKYDEFGSVKIESLKEFFANDENRNLIQFLDQNGFELKMEK
EIIQSTKLENKTFLITGTLEKPRDFYKNLIIQNGGIISSSISKKLDYLIVGQNPGSKEKK
AMELNIKIIDEEFLKKMLE
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgagtttgtcaaaatcaaaagttaaatctaaaattaaagaattaaatgaaaaattaaaa
ctttataaccatcattattacaataaaaatgaatcccttgtttctgatgaatactatgat
gcaaaacttcttgaattagaaaatataagagataactttcctgaagaatataatcaagtt
tttcaaaaagatttttcaaaaagtgtacttgaaaaagttaaccatcttgatgaacaagat
gttaaattaaaaaaagaaaagcatcaaaaattgatgctttctttaaataaagcttactca
tttgaagatcttgaaagatacacaaatcgcattaacacttttgttggtaataaccatcaa
tacatccttcaagaaaaaatagatggagtttctatttcactttattacgaaaatggaatt
ttaacaaaagctttaactagaggtgatggaatttatggtgaaaatgtcactcataatgca
ctaaatattaaagacattccaaagacaattaatatcaaagaaaacattgaacttagaggt
gaaattttctttagtcttaaactttttgaatctctaaaaaatgaatttttagataagcaa
gatggaacaaaaaacaaaaagtgaaatacaccaagaaataaagctagtggtattttaaaa
agtttaaaaacaactgatgaaagctcttgactttcttgctttatttatgaggtagttagc
cctgaaaatttcaatttaaaaactcaaaaacaactatttgattttttaaaaattcaagga
tttaatttacctaaatttgagtttatagaaaatgaaaatttaatagaaaatttcatcaca
aattttaaatttgaagatgatcaaagagactatgaaattgacggacttgtaattaaatta
aatgatcttagtttgtatgatcttttaggaaaaacttcaaagttttttcaccattcaata
gcttataaatttagaaaaaaatttgtaatgacaaaaattgaagacatctttgtaacagtt
ggtagaactggtttaattacttacaatgcaaaacttcaagaagttgttttaaatggttca
aaaatcaaagctgcaacgcttcataattatgaatatattaagaacataaaaattaatatt
ggtgataaagtctacattgaaaaagctggtgaaataatacctagagttgtaaaattagtt
agtcctaaaaatgatcaaaattactttagtccaattgagttttgtccttcatgtaaaaac
aaactttcatgatctgaaaacatgttaaatcagttttgtttaaatccagattgtattgag
aaaaaaattcaaaaactaaaatattttgtctcaaaagatggaatggaaattcaagagcta
ggtgggaaaaaaatagaacttttttttgctaaaggatgagttaaaaaaattgaggatatt
tacaatctaaaaaacaactatgatgatttgttaaaacttgaaaattttcaagaacattca
gtcaatgttttgcttcataaaattgaagagtcaaaagatgtttatacttgaaaattgata
gctgctttaggaataaaaaacataggaaaaaaacttgctaaatcacttgtaaaaatcatc
tttgaaaatgatcaaaaaaatcttttaagtcttttagaatttaactatgatgaattagaa
aaatatgatgaatttggaagtgtcaaaattgaatcactaaaagaattttttgcaaatgat
gaaaatagaaacttaattcaatttttagatcaaaatggctttgaattaaaaatggaaaaa
gaaataattcaatcaacaaaacttgaaaacaaaacttttttaattacaggaacccttgaa
aaaccaagagatttttataagaatttaattatccaaaatggaggaattatctcctcatca
atttcaaaaaaattagactatttaatagttggacaaaaccctggatcaaaagaaaaaaaa
gcaatggaattaaatatcaaaataattgatgaagaatttttaaaaaaaatgcttgagtag
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