Myroides profundi: MPR_2947
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Entry
MPR_2947 CDS
T03631
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mpw
Myroides profundi
Pathway
mpw03030
DNA replication
mpw03410
Base excision repair
mpw03420
Nucleotide excision repair
mpw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mpw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MPR_2947
03410 Base excision repair
MPR_2947
03420 Nucleotide excision repair
MPR_2947
03430 Mismatch repair
MPR_2947
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mpw03032
]
MPR_2947
03400 DNA repair and recombination proteins [BR:
mpw03400
]
MPR_2947
Enzymes [BR:
mpw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MPR_2947
DNA replication proteins [BR:
mpw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MPR_2947
DNA repair and recombination proteins [BR:
mpw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MPR_2947
NER (nucleotide excision repair)
GGR (global genome repair) factors
MPR_2947
MMR (mismatch excision repair)
DNA ligase
MPR_2947
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MPR_2947
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
AJH16085
UniProt:
A0A0B5RMN8
LinkDB
All DBs
Position
complement(3307077..3309074)
Genome browser
AA seq
665 aa
AA seq
DB search
MDIKAQLDLLRKELNEHNYNYYVLDNPTISDFDFDQKLKELEKLELAHPEYFDINSPTQR
VGGTVTKNFDTIVHRYRMYSLDNSYSKEDLLDWEQRVQKVLGDVPVEFTCELKYDGASIT
ITYEDGVLVRAVTRGDGVQGDDVTNNIRTIRSVPIRLNGDYPQSFDIRGEIVLPLAGFEK
MNQDLIEIGETPYSNPRNTASGSLKLQDSAEVAKRPLDCLLYNIVGSDLGVTTQYESLDK
ARAWGFKVPTISKLAKNIDEVLEFINYWDIHRHELPYETDGVVIKVNSLHYQDELGYTSK
APRWAIAYKFKAEQAETVLNSISYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQIA
KLDIRVNDSVYVEKGGEIIPKIVGVNLEARPADSERTVYIKECPECGTKLKRNEGEAQHY
CSNVYGCPPQIAGRIQHFISRKAMDIDGLGEETVVLLYKNELVENYADLYELKKEDVLGL
ERMGEKSADNLINGIEASKQIPFERVLYALGIRYVGETVAKKLANHYKTIDALAEAPLME
LITVDEIGERIAQSVIDFFSSDVNKEIIARLKEYGLQFVLEEKESTVVSDVLLGQTLVVS
GVFEQMSRDEIKQAIEDHGGKVGSSITSKTHYVVAGDKMGPSKLEKANKLGIKILTEAEF
IALIQ
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggatattaaagcacaattagatttacttcgcaaagaattaaatgaacataattataat
tattatgtgttggataatccaacgatttcagatttcgattttgatcagaaattaaaagaa
ttagagaagttagagttagctcatccagaatattttgatattaattctccaacacaaaga
gtaggaggtacggtgactaaaaactttgatactatagtacaccgttatagaatgtattct
ttagataactcttattctaaggaagatttgttagactgggaacaacgtgtacagaaggta
ttaggtgatgtgccagtagagtttacttgtgaattaaagtatgatggagcttctattacg
attacgtatgaagatggagtactagtaagagcagtgacacgtggtgatggagtacaaggg
gatgatgtgactaataatattagaacaattagatcagttcctattcgattaaatggagat
taccctcagagttttgatattcgtggagagatagtattgccattggcagggtttgaaaaa
atgaatcaagatttgatagaaatcggagagacgccttattctaatccaagaaataccgct
tctggtagtttgaaattacaagatagcgctgaggttgcaaaacgtcctttggattgtcta
ctttataatatagtaggaagtgatctaggagtaacaacacaatatgaaagtttagacaaa
gctagagcatggggatttaaagttcctactatctctaagttagctaagaatattgatgaa
gtattagagtttataaattattgggatattcatagacatgaacttccttatgagacagat
ggtgtggtgatcaaggttaattcattgcattatcaagatgaattaggatatacttctaaa
gcaccgagatgggctatagcatataagtttaaagctgaacaagcagagactgtattgaac
tctatttcttaccaagtaggtagaacaggtgctataactcctgtagcaaacttggaacct
gtacaattggcaggaacgatagtgaaacgtgcttctttacacaatgctgatcagatagcg
aagttagatattcgtgtgaatgactctgtatatgtggaaaaaggaggagagattattccg
aaaatagtaggtgtgaatttagaggctagaccagctgattctgaacgtacagtatatatt
aaggaatgtcctgaatgtggtactaagttaaagagaaatgaaggggaggcacagcattat
tgttcaaatgtgtatggatgtccacctcaaatagcgggtagaatacaacactttatctct
cgtaaggcgatggatatagatggtctgggagaagaaactgtggtactgttatacaagaat
gaattagtagagaattacgctgacttatacgagttaaagaaagaggatgttctaggttta
gaacgcatgggagagaagtctgcagataatctgataaatggtatagaagcttctaaacag
attccttttgaacgtgtattatacgcattagggatccgttatgtaggagagactgtggct
aaaaagttagcgaatcattataagacaatagatgctctggcagaagctccattaatggag
ttgataacagtagatgagattggtgaaagaatagcacaaagtgtaatagacttctttagt
agtgatgttaataaagaaataattgctagattaaaagagtatggtctacaatttgtgtta
gaagaaaaggagtctacagtagtgtcagatgttctactaggacagacattagtggtatct
ggggtgtttgaacaaatgtctcgtgatgagattaaacaagctatcgaagatcatggagga
aaagtaggaagttctattacttctaagactcactatgtcgtagcaggagataaaatggga
ccatctaagttggaaaaagcgaataaactaggtattaaaatattaacagaagcggagttt
attgcgttaattcaataa
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