Marinitoga piezophila: Marpi_0231
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Entry
Marpi_0231 CDS
T01665
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mpz
Marinitoga piezophila
Pathway
mpz03030
DNA replication
mpz03410
Base excision repair
mpz03420
Nucleotide excision repair
mpz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mpz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Marpi_0231
03410 Base excision repair
Marpi_0231
03420 Nucleotide excision repair
Marpi_0231
03430 Mismatch repair
Marpi_0231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mpz03032
]
Marpi_0231
03400 DNA repair and recombination proteins [BR:
mpz03400
]
Marpi_0231
Enzymes [BR:
mpz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Marpi_0231
DNA replication proteins [BR:
mpz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Marpi_0231
DNA repair and recombination proteins [BR:
mpz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Marpi_0231
NER (nucleotide excision repair)
GGR (global genome repair) factors
Marpi_0231
MMR (mismatch excision repair)
DNA ligase
Marpi_0231
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Marpi_0231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
PTCB-BRCT
HHH
BRCT_2
DNA_ligase_ZBD
5_3_exonuc
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
AEX84683
UniProt:
H2J3N9
LinkDB
All DBs
Position
complement(238566..240566)
Genome browser
AA seq
666 aa
AA seq
DB search
MIPEDIKKEYEELKKVIEKHNYQYYVLNNPIISDTDYDKLFKKLLQIEKKYPEIITADSP
SFRVGGKIISEFKTVQHSIPMLSLDNTYNENEIIDFDNRVKRLLNKENVEYSCELKIDGI
SIALKYENGYLVQAITRGNGISGDDVTDNVKTIRSIPLKLSEDVTIEVRGEIFMPKKEFL
KINEYRESEGLQVFANPRNATAGTIKLLDTSEVAKRHLDSYIYYIISPENYNITTQIDAL
KYLKKLGFKINENTKLAKNINEVIEYWKYWTENKAKLNYDVDGVVIKVNSFEEQQILGNT
ARSPRWAIAFKFPAEQAITKVKDIKYQVGSTGVITPVAIFEPVFLEGTTVQRASLHNFEY
IKERDIRIGDYVKIEKAGGIIPQVVTVLTEKRTGNEIPIEEPKECPVCGGKVGKLNPEEV
AIRCLNPLCKAKLKRNLEVWVSRDAMNIQGLGPKLIDRMVEAKLIEKIPDLYKLDHFKLA
TLGHGIGPKMISNILQQIENSKNRGLDRVLYAIGIPNVGKKIAKDLAKKFKTIDNLMNAN
YDELLSIEGIGEDIAQQIYDFFKDPHVKEIIEELKEAGVSLTYETEENTEGVFSGMTICA
TGELERMPRSKLKELIEKNGGIFKDTVTKKLNLLVVGKNAGSKLQKAQKFGIPIMTEEEF
FEKYKI
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgataccagaagacataaaaaaggaatatgaagaacttaaaaaagttatagaaaaacat
aattatcaatattatgtgttgaataatcctattataagcgatacggattatgataaatta
tttaaaaaattacttcaaatagaaaagaaatatcctgaaataattacagctgattcacct
tcttttagggttggcggtaaaattatcagtgaatttaaaactgttcagcattctattcca
atgctcagtcttgacaacacatataatgaaaatgaaataatagactttgataatagagtc
aaaagattattaaacaaagaaaatgtcgaatattcctgtgaattaaaaattgacggtata
tcaattgccttaaaatatgaaaatggatatttagttcaggctataacgaggggaaacgga
atttcaggtgacgatgtaacagataatgtaaaaactataagaagtattcctttaaaactt
tctgaagatgtaactattgaagttagaggcgagatatttatgcccaaaaaagaattcttg
aaaataaatgaatatagggaaagtgaagggcttcaggtatttgcaaatccgagaaatgca
actgctggaacaattaaattattggatacctcggaagttgccaaaagacatcttgattca
tatatatattatataatttcaccggaaaattacaatataacaactcaaattgatgcttta
aaatatttaaaaaaattaggatttaaaataaatgaaaatacaaaacttgctaaaaatata
aatgaagttatcgaatactggaaatattggacagaaaataaagcaaagttaaattatgat
gtagatggcgttgtaataaaagttaatagttttgaagaacaacaaattcttggaaatacc
gctcgttctccaaggtgggctatagcatttaaatttcctgcagaacaggctataactaaa
gtaaaggacataaaatatcaggtgggtagtactggagtaataactcccgttgctatattt
gaacctgtttttttagaaggcactactgttcaaagagcaagtttgcataattttgaatat
ataaaggaaagagatataaggattggggattatgtaaaaatagaaaaagcaggagggatt
attcctcaagttgttacagtgctcacagaaaaaagaacaggtaatgaaattccaatagaa
gaaccaaaagaatgtccagtatgtggtggaaaggttgggaaattaaatcctgaggaagta
gctataagatgtttaaatcctctgtgtaaagcaaagctaaaaagaaatcttgaagtttgg
gtttcaagagatgcaatgaatatacagggacttggacctaaattaattgatagaatggtt
gaagctaaattaattgaaaaaatacctgatttatataaattagaccattttaaacttgca
acattaggtcatggaattggtccaaagatgataagtaatatacttcaacaaattgaaaat
tcaaaaaacaggggattagatagagtattatatgctataggaattcctaatgttggtaaa
aaaatagcaaaagaccttgctaaaaaatttaaaacaatagataatcttatgaatgcaaat
tatgatgaacttctttcaattgagggaattggagaagatattgcacaacagatttatgat
ttctttaaagatccacatgtaaaagaaattatagaagaattaaaagaagctggagtttct
ctaacatatgaaacagaagaaaatacagaaggtgtcttttctggaatgacaatatgtgca
acaggtgaattggaaagaatgccaagaagtaaattgaaagagttaattgaaaaaaatgga
ggtatttttaaagatacagtaactaagaagctcaaccttttggtagttgggaaaaatgca
ggaagcaaactacaaaaagcacagaaatttggaattccaataatgacagaagaagaattt
tttgaaaaatataaaatataa
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