Meiothermus ruber DSM 1279: K649_14210
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Entry
K649_14210 CDS
T02636
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mre
Meiothermus ruber DSM 1279
Pathway
mre03030
DNA replication
mre03410
Base excision repair
mre03420
Nucleotide excision repair
mre03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K649_14210
03410 Base excision repair
K649_14210
03420 Nucleotide excision repair
K649_14210
03430 Mismatch repair
K649_14210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mre03032
]
K649_14210
03400 DNA repair and recombination proteins [BR:
mre03400
]
K649_14210
Enzymes [BR:
mre01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K649_14210
DNA replication proteins [BR:
mre03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K649_14210
DNA repair and recombination proteins [BR:
mre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K649_14210
NER (nucleotide excision repair)
GGR (global genome repair) factors
K649_14210
MMR (mismatch excision repair)
DNA ligase
K649_14210
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K649_14210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
PTCB-BRCT
HHH
DNA_ligase_ZBD
5_3_exonuc
BRCT_2
DUF445
Motif
Other DBs
NCBI-ProteinID:
AGK06128
UniProt:
D3PSJ8
LinkDB
All DBs
Position
complement(2847044..2849044)
Genome browser
AA seq
666 aa
AA seq
DB search
MQTPKQRIMELRELIRYHNYRYYVLDKPEISDAEYDRLLQELRALEEAHPELIIPDSPTQ
TVGSAILETPFTPVPHPTRMYSLGNAFSQDDIADFEASINRFLGREESREYVLEYKIDGL
SVNLIYEEGVFRQGLTRGDGLTGEDVTPNLLAIPDIPRQLPQPLDLEVRGEIYLPIQTFL
ELNTQLEEAGEPPFKNPRNAAAGSLRQKDPRISASRGLRGLFYGVGRPESLGVGTQQELL
EKLGQLGFSVDPHYQVVRGVEGIEQGYQAMLAARKSLPFEADGVTVKLNNLSLWSELGYT
AKTPRFAIAYKFPAEEKTTRVLRVIFQVGRTGRVTPVAELEPVFLDGSTVSRVTLHNESY
VQELGLRIGDTVLVHKSGGVIPEVLRVVTEAPRGHAPVEWPTHCPECGTALELSGKIHLC
PNPLCPAKAFEAIRHFASRRAMDIQGLGEKLIEQLLETGLVRDAADLYNLKKEDIAALER
KAEKSAQNLIEQIEASKSRGLERLLFALGIPQVGESTARALAKRFGHLDSILKATVEELD
AVPDIAETTAQAIHQALARPEMQSFIERLRAAGLVFEAREKQQSQALEGLTFVLTGELSR
PREEVARQLEAHGAKISGSVSRKTSYVIAGPGAGSKLSKAKELGIPILDEAGLRALLEQK
IGAASI
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgcagacccctaagcagcgcatcatggaactgcgggagctgattcgctaccacaattac
cgctattacgtgctggacaaaccggaaatttccgatgccgagtacgaccgcctgctccag
gagctgagggcccttgaagaagcccatcctgagctgatcatccccgactcccccacgcaa
accgtgggcagcgccatcctcgagacccccttcacccccgtgccccaccccacccgtatg
tactcgctggggaacgccttttcgcaagacgacatcgccgatttcgaggccagcatcaac
cgcttcctgggccgggaagagtcgcgcgagtatgtgctggagtacaagattgacggactc
tcggtcaacctcatctatgaagagggggtgtttcgccaggggctcacccgcggcgacggc
ctgaccggcgaggacgtaacgcccaacctgctagcgattcccgacattccccggcagcta
ccacagcccctcgacctcgaggttcggggggaaatttacctacccatccagacctttttg
gagttgaacacgcagctcgaggaggctggggagcctcctttcaaaaacccgcgcaacgcc
gcagccggcagcctacggcaaaaagacccccgaatcagcgccagccggggcttgcggggc
ctgttttatggggtgggaaggccggaaagcctgggggtcggcacccagcaagaattgctg
gagaaactaggccagcttggtttctccgtggatccgcattaccaggtggtgcggggcgtg
gagggcatcgagcagggctaccaggccatgctggccgcgcgcaaaagcctgccttttgaa
gccgatggcgtgaccgtcaagctcaacaatctttccctgtggagcgagctgggctacacc
gccaaaaccccccgtttcgccatcgcctacaagttccccgccgaagaaaagaccacccgg
gtgctgcgggtaatctttcaggtggggcgcaccggccgggtcaccccggtggcggagctc
gagccggtctttctggacggctccaccgtgagccgggtcaccctgcacaacgaaagttac
gtacaggagctgggcttacgcatcggggataccgtgctggtacacaaatcgggcggggtg
atccccgaggtgttgcgggtggtcaccgaggccccccgggggcatgcgcccgtggagtgg
cccacccactgtcccgagtgcggtacagccctcgagctttcgggcaagattcacctctgc
cccaaccccctatgcccggccaaggctttcgaggcgatccggcattttgccagccgcagg
gccatggacatccagggcctgggcgagaagctgattgagcagcttttggaaaccggtctg
gtgcgggatgccgccgacctctacaaccttaagaaagaagatattgccgcgctcgagcgc
aaggccgagaaaagcgcccagaaccttattgagcagatcgaggccagcaaaagccggggc
ctcgagcggctgctctttgcgctgggcattccccaggtcggcgaaagcaccgcccgggcc
ctggccaagcgctttgggcacctggacagcatcctgaaggccacggtcgaggagctggat
gccgtaccggacatcgccgagaccactgcccaggccatccaccaggccctggctcgcccg
gagatgcagagcttcatcgagcgcctgcgggccgctggtttggtgttcgaggccagagaa
aagcagcaaagccaggccctcgagggtcttacctttgtcttaaccggcgagctctcgcgc
ccccgggaagaggtcgcgcggcagctcgaggcccacggggccaaaatttccggctccgtg
agcagaaaaaccagctatgtgatcgccgggccaggggcgggctccaagctcagcaaggcc
aaagagctgggcattcccattctggacgaagcaggcctacgggcgctgctggagcagaaa
atcggcgcagcctccatctag
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