Mycolicibacterium rufum: MJO55_09500
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Entry
MJO55_09500 CDS
T08167
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mrf
Mycolicibacterium rufum
Pathway
mrf03030
DNA replication
mrf03410
Base excision repair
mrf03420
Nucleotide excision repair
mrf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mrf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MJO55_09500 (ligA)
03410 Base excision repair
MJO55_09500 (ligA)
03420 Nucleotide excision repair
MJO55_09500 (ligA)
03430 Mismatch repair
MJO55_09500 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mrf03032
]
MJO55_09500 (ligA)
03400 DNA repair and recombination proteins [BR:
mrf03400
]
MJO55_09500 (ligA)
Enzymes [BR:
mrf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MJO55_09500 (ligA)
DNA replication proteins [BR:
mrf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MJO55_09500 (ligA)
DNA repair and recombination proteins [BR:
mrf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MJO55_09500 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MJO55_09500 (ligA)
MMR (mismatch excision repair)
DNA ligase
MJO55_09500 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MJO55_09500 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ULP39471
LinkDB
All DBs
Position
1984813..1986894
Genome browser
AA seq
693 aa
AA seq
DB search
MAEQAGDAPEPDLRRRWQELADEVREHQFRYYVRDAPVISDAEFDTLLRRLQALEDEHPE
LRTPDSPTQLVGGAGFATDFTPADHLERMLSLDNVFDPEELGAWAARIAGEIGPDADYLC
ELKIDGVALALVYRDGRLVRAATRGDGRTGEDVTLNARTIEDVPEKLTETEEFPLPAVLE
VRGEVFFRVADFEELNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRRLRMICHGLGH
IEGPGGFPFTSLHDAYRALQAWGLPVSTHTAKVVGLGAVTERIAYWGEHRHDVEHEIDGV
VVKVDELALQRRLGSTSRAPRWAVAYKYPPEEATTTLLDIRVNVGRTGRVTPFAYMEPVK
VAGSTVGLATLHNASEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGSEREFVMPTH
CPECGTELAPAKEGDADIRCPNARTCPAQLRERVFHVAGRGAFDIEGLGYEAAIALLQAG
VLTDEGDLFTLTTDDLLRTELFTTQKGEVSANGKRLLANLGKAKAQPLWRVLVALSIRHV
GPTAARALATEFGSLDAIMAASEEQLATTEGVGPTIAAAVIDWFTVDWHRAIVDKWRAAG
VRMADERDTSIERTLEGMSIVVTGSLTGFSRDDAKEAIIARGGKAASSVSKKTAYVVAGD
APGSKYDKAIELGVPVLDEDGFRRLLEGGPDRV
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
ctggcagagcaggccggtgacgcgccggagcccgatctgcgccgccgttggcaggagctc
gccgacgaggtgcgcgagcaccagttccgctattacgtgcgcgacgccccggtgatctcg
gatgcggagttcgacaccctgctgcgtcgtctgcaggccctcgaggacgagcatcccgag
ctgcgcaccccggactcgcccacccagctggtcggcggcgccgggttcgccaccgatttc
accccggccgaccatctcgagcggatgctcagcctggacaacgtcttcgatcccgaggag
ctgggcgcctgggcggcgcggatcgcgggcgagatcggcccggacgccgactatctgtgc
gagctgaagatcgacggcgtcgcgctggccctggtgtaccgcgacggccggctggtccgc
gccgccacccggggtgacggccgcaccggcgaagacgtcaccctgaacgcccgcaccatc
gaggacgtgcccgaaaagctcacggaaacagaggaatttccgctacccgcggtgctcgag
gtgcgcggcgaggtgttcttccgggtggccgacttcgaagagctcaacgcgggtctggtc
gccgagggcaagccgcccttcgccaatccgcgcaacagtgcggcggggtcgctgcggcag
aagaacccggcggtgaccgcacggcggcggttacggatgatctgccacggcctcggccac
atcgaaggccccggggggtttccgttcacgtccctgcacgacgcctaccgggcgctgcag
gcgtgggggctgccggtgtcgacgcacaccgccaaggtcgtcgggctgggcgcggtgacc
gaacgcatcgcctactggggtgagcaccgccatgacgtcgagcacgagatcgacggcgtg
gtcgtcaaggtcgacgagttggcgctgcagcggcggctcggctccacctcgcgggcgcca
cgctgggcggtggcctacaagtacccgcctgaggaggcgaccaccacgttgctcgacatc
cgggtcaacgtgggccgcacgggccgggtcacaccgttcgcctacatggagccggtgaag
gtcgccgggtcgacggtcgggctggcgacgctgcacaacgcctcggaggtcaagcgcaag
ggcgtgctgatcggcgacaccgtggtgatccgcaaggccggtgacgtcatccccgaggtg
ctcgggccggtggtggacctgcgcgacggcagcgagcgcgagttcgtgatgccgacgcac
tgcccggaatgcggcaccgaactggcgcccgccaaggagggcgacgccgacatccgctgc
cccaacgcgcgcacctgtccggcgcaactgcgggagcgggtgttccacgtcgcgggccgt
ggcgccttcgacatcgaggggctgggctacgaggcggcgatcgcgctgctgcaggccggc
gtcctcaccgacgagggcgatctgttcacgctgaccaccgacgacctcctgcgcaccgag
ctgttcaccacccagaagggtgaggtgtcggccaacggcaagcggctgctggccaacctc
ggcaaggccaaggcccagccgctgtggcgggtgctcgtcgcgctgtcgatccgccacgtg
ggcccgacggccgcgcgggccctggccaccgagttcggcagcctggacgccatcatggcc
gcctccgaggagcaactcgccaccaccgagggggtcggcccgacgatcgcggccgcggtc
atcgactggttcaccgtcgactggcaccgcgcgatcgtcgacaagtggcgcgcggccggg
gtccggatggccgacgaacgcgacaccagcatcgaacgcaccctcgagggcatgtcgatc
gtcgtcaccgggtcgctgacggggttcagccgtgacgacgccaaggaggcgatcatcgcg
cgcggcggcaaggcggccagttcggtgtcgaagaagaccgcgtacgtcgtcgccggcgac
gcgccgggctccaagtacgacaaggcgatcgaactcggcgtccccgtgctcgacgaggac
ggattccgccgcctactcgagggcggcccggacagggtgtga
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