Microbacterium rhizosphaerae: SM116_08030
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Entry
SM116_08030 CDS
T09585
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mrg
Microbacterium rhizosphaerae
Pathway
mrg03030
DNA replication
mrg03410
Base excision repair
mrg03420
Nucleotide excision repair
mrg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mrg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SM116_08030 (ligA)
03410 Base excision repair
SM116_08030 (ligA)
03420 Nucleotide excision repair
SM116_08030 (ligA)
03430 Mismatch repair
SM116_08030 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mrg03032
]
SM116_08030 (ligA)
03400 DNA repair and recombination proteins [BR:
mrg03400
]
SM116_08030 (ligA)
Enzymes [BR:
mrg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SM116_08030 (ligA)
DNA replication proteins [BR:
mrg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SM116_08030 (ligA)
DNA repair and recombination proteins [BR:
mrg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SM116_08030 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SM116_08030 (ligA)
MMR (mismatch excision repair)
DNA ligase
SM116_08030 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SM116_08030 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
HHH_5
BRCT
HHH
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
WPR91221
LinkDB
All DBs
Position
1829026..1831347
Genome browser
AA seq
773 aa
AA seq
DB search
MTDAPITELLELSLDEARAEAAGLTERIIQARDAYYGRDTLVVDDAEYDGWMHRLEAIER
IYPELQGQDSPTLTVGAAENTQFAPVEHAERMLSLDNVFSPEELREWCVKAQASAGARVR
WLTELKIDGLAISLRYENGVLTSAATRGDGRVGEDVTVNALRVAGIPQRLSGTGHPSIVE
VRGEVFIPVAAFDRLNAFQAELRERVVEEARARGRGFDETKALISAERRFPSFANPRNAA
SGGLRQQLDKKDGLELEAGRARLESLRLFVHGIGAWASPPVASQSEVYGLLAGWGLPTSP
YFRTSDDIDGVLDFVAYYGEHRHDVEHEIDGIVVKVDDLALHDELGATSRAPRWAIAYKY
PPEQVNTKLLDIVVSVGRTGRATPYAVMAPARVAGSVVRQATLHNQDVVRAKGVLIGDTV
VLRKAGDVIPEILGPVVELRDGSEREFVMPANCPVCGFPLRPAKEGDIDLRCPNARSCPA
QVQGRVEHIGSRGALDIEVLGEVTAAALTQAEPPSVAPLETEAGLFSLSMDDIVPISVVV
RDSETGEMKVDELTGAPVRRTPFRRNPTAAEKKQGIEGPQPSAAAVKLLAELEKAKTKEL
WRLLVALNIRHVGPVAARALAQWFGSLDAIRAADRDQLAEVEGVGGIIADSLIEWFDVDW
HREIVDRWTAAGVQWATPGHPGPGAAVASGGVLEGLTVVATGSLDGYTREGAQEAIIQAG
GKAASSVSKKTDFVAAGPGAGSKLAKAEELGVRILDAAQFHVLVTQGPQALDS
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
gtgacggatgccccaatcaccgaacttctggagctgagcctcgacgaggcgcgtgccgag
gccgccggtctcaccgagcggatcatccaggcgcgggatgcgtactacggtcgcgacacc
ctggtcgtcgacgacgcggagtacgacgggtggatgcaccgcctcgaggcgatcgagcgg
atctaccccgagctgcagggccaggactcgcccacgctcaccgtcggcgccgcggagaac
acgcagttcgccccggtcgagcacgccgagcggatgctgagtctcgacaacgtgttctca
cccgaagagctgcgggagtggtgtgtcaaggcgcaggcgtccgccggtgcacgggtgcgg
tggctgaccgagctcaagatcgacggcctcgcgatcagcctccgctacgagaacggcgtc
ctgacctccgcggcgacgcgcggcgacggccgtgtgggcgaggacgtcaccgtcaacgcc
ctccgggtggccggcatcccgcagcgcctgagcggaaccggtcatccgtcgatcgtcgag
gtgcgcggcgaggtcttcatccccgtcgccgcgttcgatcggctcaacgcgttccaggcc
gagctgcgcgagcgggtggtcgaggaggcgcgagcgcgaggcaggggattcgacgagacg
aaggccctgatcagcgcggagcgacggttcccgtcgttcgcgaatccgcgcaacgccgcg
agcggaggtctgcgccagcagctggacaagaaggacggcctcgaactcgaagccggccgg
gcccggctggagtcgctgcggctgttcgtgcacggcatcggcgcctgggcgagcccgccg
gtcgcctcgcagagcgaggtgtacggactgctcgcgggatggggactgcccacgagcccg
tatttccgcacgagcgacgacatcgacggcgtcctcgacttcgtcgcgtactacggcgag
caccgccacgacgtcgagcacgagatcgacggcatcgtcgtgaaggtcgacgatctcgcg
ctgcacgacgagctcggcgccacgagccgcgcgccgcgctgggcgatcgcgtacaagtac
ccgccggagcaggtcaacaccaagctcctcgacatcgtcgtctcggtcggccggaccggc
cgcgcgaccccgtacgccgtgatggcgccggcacgggtggcgggctcggtcgtccggcag
gcgacgctgcacaatcaggacgtcgtccgggcgaagggggtgctcatcggcgacaccgtc
gtgctgcgcaaggcgggcgatgtcatcccggagatcctcggtccggtcgtcgagctgcgc
gacggcagcgagcgcgagttcgtgatgcccgcgaactgcccggtgtgcggcttccccctg
cgcccggccaaggagggcgacatcgacctgcgctgcccgaacgcccgctcgtgcccggcg
caggttcagggccgcgtcgagcacatcggctcgcgcggcgcactcgacatcgaggtgctc
ggcgaggtgaccgcggccgccctcacgcaggcggagccgccgtcggtcgcgcccctggag
acggaggcgggcctgttctccctgtcgatggacgacatcgtcccgatctcggtcgtcgtg
cgggattcagagaccggcgagatgaaggttgacgagctcaccggcgcgcccgtgcggcgg
accccgttccgacgcaacccgacggccgccgagaagaagcaggggatcgagggtccgcag
ccctcggccgctgccgtcaaactcctggccgaactcgagaaggcgaagacgaaggagctg
tggcgcctgctcgtcgcgctcaacatccgtcacgtcggcccggtcgcggcgcgcgccctc
gcgcagtggttcggctcgctcgacgcgatccgcgccgccgatcgcgaccaactggccgag
gtcgaaggcgtcggcgggatcatcgcggactcgctgatcgagtggttcgacgtcgactgg
caccgcgagatcgtcgaccgatggactgctgccggcgtccagtgggccactccgggccat
ccgggtccgggtgcggcggtcgcctcgggcggcgtcctcgaggggctcaccgtggtcgcg
acgggctcactggacggctacacgcgcgagggagcgcaggaggccatcatccaagccggc
ggcaaggccgcgtcgagcgtgtcgaagaagacggacttcgtggctgccggccccggtgcg
ggctccaagctcgcgaaggctgaagagctcggtgtgcggatcctggatgctgcgcaattc
cacgtgctcgtcacccaggggccgcaggcgctcgactcctag
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