Macrobrachium rosenbergii (giant freshwater prawn): 136830765
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Entry
136830765 CDS
T10429
Symbol
DNAlig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
mrj Macrobrachium rosenbergii (giant freshwater prawn)
Pathway
mrj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mrj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
136830765 (DNAlig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mrj03400
]
136830765 (DNAlig4)
Enzymes [BR:
mrj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
136830765 (DNAlig4)
DNA repair and recombination proteins [BR:
mrj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
136830765 (DNAlig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
Lig_chan-Glu_bd
DNA_ligase_A_C
Lig_chan
BRCT
RNA_ligase
SBP_bac_3
LIG3_BRCT
DNA_ligase_IV
DUF7004
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
136830765
NCBI-ProteinID:
XP_066946740
LinkDB
All DBs
Position
47:complement(37131004..37218838)
Genome browser
AA seq
1340 aa
AA seq
DB search
MICSASNAWHILHWVSEQKEEPASLLKSIHWIIVVDDDELMPRFESILDEESQFTIAQIE
SDAAVTLLTTTFRQNGRIGFVPVGKWWWFQDSWSHKLNRPLTSLTHRQQFMNLQGRVMKV
AAVDNWPWFGLKEGPAGEPLPDTGIDTSIITTISQVLNFTIEIVIPEDGQWGGPQPDGTV
SGLIGMVSNYKAHFVIDEITITASRETVVDFTSPYYIESSTCVSRSPKEKSRAFAVFSPF
TPEVWLVLGLSVFAYSFAIYITNLLSLSTPNGRRRSTDMTLDRITYSTFRSLVRMDNTLV
PPSWSIRYLFGAWYLYCYYINSVYSGVLTAYLSVPSYEKPIDSLSDLLDATHKGFYPVIF
REGSIDFLFKSATSGVYRDIGRLITGEKNYVNVIADGVAATLYSKAVYIEARLASEMQTL
KQGQEKFYMGRQSFFPQSYGIVCRTRSPFKSVMSNMMSNSGSVACLVPWSQVCKMLDKVQ
SAVKGNKKEMLLKFITQYRDLLRKKTERDPQATDSFFPMLRVLLPALDRARGAYGVKERK
LAELYIRILGLKKDGTDGQKLLNFRKPKSLAGGEAGDFADVAYYVLRSRCPDTGKMTLED
VDGRLTAIAENYAAKNHEEVERSLLVMLRGMTATEQKWLIRVLLKDMRLGIGQGTIFNAW
HPDAKDLYDVNNSLEKVSVALRDPTVRLHEIEVSLFSAFRPMLAERALLEKVEAQMNHKA
YYAETKYDGERSQIHKKGSVYKYFSRNGFDFTDNFGADPKSGIFTPYLHGLFLPSVRDVI
LDGEVVSWSKTHKSIISKGEHMDVKNLREDGDYQVCLCVFDIIYLNGEVLTNQPLSERLS
KLKDVISPHEGRVIISPRTTVHSKEDVIKILNEAIDNREEGVVLKNPDSVYRPASRKAGW
IKVKPEYVDSLVPELDLLIIGAYYGKGRRQGVLSHFLLAVAVENTEPGGKPREFHSICRV
GSGYTVAELSDLVDKLSPHTSRQQPPGVIVAREKPDIWINPVKSCVVQVRAAEVVKSLLY
QTGVTLRFPRVEKVRYDKPWYDILTTKELNELEKEASGKLATKHYIDAGDEPAAKRKTPS
KADHPSLPSHFRPADLTKVVKKADVLAGKEICVMGGDESLTKQQIEKLIVEHGGSLTQHP
KKDTFCIVSDTFSVRVNNYVKSHNIVRPSWIELCVKRSALMPFGPLDVLSLLDGKRDSMK
ELFDEFGDSYTDPLDERMLKKIMSNMKEKSWKKLSPKEMYELDQELCEPGNINGLFRIIA
AHFYDCDCNDLPALAFRLHGGTPERDLSKASHVIITNSDKLKFRPSELAGQHLVTCDWIY
DCIDKRKLLEERHYAPICLA
NT seq
4023 nt
NT seq
+upstream
nt +downstream
nt
atgatttgctcggcgagtaatgcttggcatattcttcactgggtatctgagcagaaggaa
gagccagcgtctctgctgaaatcaatccactggatcatcgtcgtggatgacgatgagttg
atgcccagatttgaaagcatcctcgacgaagagtctcagttcacaatcgcccaaatagaa
tctgacgcagctgttacgctacttaccacgacgttccgccaaaatggcagaattgggttt
gtcccagttggaaaatggtggtggttccaagacagttggagccacaagctgaacaggcct
ctgaccagcctgacgcaccgtcaacaattcatgaacctacaaggcagagtgatgaaggtt
gctgccgtagacaactggccttggttcggtttgaaggaaggccccgcaggcgaaccctta
ccagatacggggatagacaccagcatcattaccactataagccaagttcttaatttcacg
attgaaatcgttattcccgaagacggccagtggggcggtcctcagcccgatggcacggta
tcaggtctcattgggatggtgtccaactacaaagctcactttgtaattgacgaaatcacc
attactgcttcaagggagactgtcgtggacttcacctctccctattacatcgagtcctcg
acctgcgtctccagatcgccgaaggaaaagagcagggcgtttgccgtgttttcccctttc
actccggaggtttggctggtgctgggactaagcgttttcgcttatagcttcgcgatctac
atcacgaatctgctctcgctatcgactcctaacggaagaagaagaagcacagacatgacg
ttggatcgcatcacctacagcaccttccgtagcctcgtgagaatggacaacaccctggtg
cccccatcctggtctatcaggtacctcttcggtgcttggtacctgtactgctattacatc
aattccgtgtattctggcgtcctcacggcctacctgagcgtccccagttacgagaagccg
atagactctctctccgatctcctcgatgcgacacacaaaggattttatcccgtgatcttc
agagaaggaagcatcgacttcctcttcaagtctgcaacttcgggcgtctatcgcgacatc
ggacgtctcatcacgggagaaaagaactacgtgaatgtcatcgcagacggcgttgctgct
actctttatagtaaggctgtctacattgaggctcgcttggcatccgaaatgcaaactctc
aaacaaggtcaagagaagttctacatgggacgtcagagcttctttccacaaagttatgga
attgtttgccggacgagatcgcccttcaaaagtgtcatgagcaacatgatgtcaaatagt
gggtcggttgcttgtcttgtgccgtggtcacaagtctgcaaaatgttggacaaagttcag
tctgctgtgaagggaaacaaaaaggaaatgcttttgaaattcatcacacaatatcgagat
cttctcaggaagaagacagaacgggatccacaagctactgacagtttctttcctatgctt
cgagtgttactaccagctctagatcgtgcaagaggtgcatatggtgtgaaggaacgcaag
ctggcagagctttatatacgcatattgggcttgaagaaggatggcacagatggtcagaag
cttttgaattttagaaaaccaaagtcgttagctgggggtgaggctggagattttgcagat
gtagcatattatgtacttagaagtcgttgccctgatacaggaaagatgactctagaggat
gttgatggtcgtctgacggctattgccgagaattatgccgctaaaaatcatgaggaagtt
gagcgatcactgttggtaatgctgcgcggcatgacagcaacagaacagaaatggctgatt
cgtgtattactcaaagatatgagacttggaattgggcaaggaacaatattcaacgcttgg
catcctgatgccaaggacttatatgatgtcaacaatagtttggagaaggtttcagtagca
ttgcgagatccaactgttcgattacatgaaatagaggtatctttattctctgcctttcgt
cccatgcttgctgaaagggcattgttagaaaaagttgaggctcagatgaatcacaaggca
tattatgcagagacgaagtatgatggagaaagatctcagattcacaagaaaggcagtgtt
tataagtatttttcaaggaatggttttgactttactgacaactttggtgctgacccaaaa
tctggaatttttacgccttacttacatggattgtttcttccaagtgttagagatgttatc
ttggatggggaagtagtttcttggagtaaaactcataaatcaattatcagtaaaggtgag
cacatggatgttaagaacttgcgtgaagatggagactatcaagtttgcttatgtgttttt
gatatcatttacttgaatggtgaagttttgaccaatcagccattatcagagagattaagc
aaactgaaggatgtgatctctccccatgagggccgtgtaattatatccccaaggactaca
gtacactcaaaagaggatgttattaaaattctgaacgaagcaattgacaaccgagaagaa
ggtgttgtcttaaagaacccagactctgtttatcggccagcttctcgtaaggcaggatgg
attaaagtgaagcctgagtatgttgactcgcttgtgccagagctggatttgttgattatt
ggtgcatattatggaaagggaagaaggcaaggtgtcttgtctcatttcttgttggcagtt
gctgttgaaaatacagagccaggtggaaagccacgagagtttcattctatttgccgtgtt
gggtcaggttacacagttgctgaactgagtgaccttgttgacaagctttctccccataca
agtagacagcagcctccaggagttattgtcgccagagaaaaaccagatatttggataaat
cctgttaagtcttgcgttgttcaggttagagctgcagaagtggtgaagagtctcctatat
cagactggtgtaactttaagatttccccgagtggagaaagttcgttatgacaagccttgg
tatgatatactaacaacaaaggaactaaatgaattggaaaaggaagcaagtggtaaactt
gcaaccaaacattacattgatgcaggtgatgaacctgcagccaaacggaaaacgccatca
aaagcggatcatccctcattaccttcacattttaggcctgctgatttaacaaaagttgta
aagaaagcagatgtgcttgctggcaaggagatttgtgtcatgggaggcgatgaaagtttg
accaaacaacaaatagaaaagttaattgttgaacatggaggatctttaactcagcaccca
aaaaaggataccttctgcattgtgtcagatactttctctgttcgagtaaataattatgtc
aaatcgcacaatatagtacgcccatcttggattgagctgtgcgttaagaggagtgctttg
atgccttttgggcctttagatgtgttgtcacttcttgatgggaaaagagacagcatgaag
gagctctttgatgaatttggcgacagttacacagaccccctggatgaacgaatgctgaaa
aagataatgtctaatatgaaagaaaagtcttggaagaagctgtctccaaaagaaatgtat
gagcttgatcaagaattgtgtgaacctggcaatattaatggtctgtttcgtattattgct
gcccacttttatgattgtgactgtaatgatctcccagctcttgcttttaggctgcatggt
ggaacaccagagagggatctgtccaaagctagtcatgtaatcattaccaacagtgataaa
cttaagttccgacctagtgagttagctggccagcatttggtgacctgtgattggatctac
gattgcattgacaagagaaaacttttagaagaaagacattatgcacccatatgccttgca
taa
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