Macrobrachium rosenbergii (giant freshwater prawn): 136852605
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Entry
136852605 CDS
T10429
Name
(RefSeq) TAR DNA-binding protein 43-like isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
mrj Macrobrachium rosenbergii (giant freshwater prawn)
Pathway
mrj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mrj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
136852605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrj03019
]
136852605
Messenger RNA biogenesis [BR:
mrj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
136852605
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TDP-43_N
RRM_1
RRM_PARP14_3
RRM_7
Nup35_RRM_2
RL
TMEM181_GOLD
Motif
Other DBs
NCBI-GeneID:
136852605
NCBI-ProteinID:
XP_066983586
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All DBs
Position
25:41574391..41588995
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AA seq
456 aa
AA seq
DB search
MVNMSCYIQVCEDENEEPIEIPTEEDGTLSLSTLVAQFPGACGLKYRHPESRGLRGVRLI
DGRLHPPDEGWNFIFVCVFPKGEDRSCNYQMNEDMKSGCIDGVMKENKRKSDDHLESSMS
KTKRMESKQRCSDLIVLGLPWKTTEKELREYFEPFGEVLMAQVKKDPKTGQSKGFGFIRF
GSYDSQVRVLSQRHMIDGRLCDVKIPNSKEGMVQQVNSKVFIGRCTEDITADDLREYFSK
FGEVTDVFIPKPFRAFAFVTFLDPEVAQTLCGEDHIVKGTSVHVSNAAPKGDPNRGPFGR
GGRMDGRGYGQGGYGQGMNNGGGWNQGGNREMPNLAALGTSLGLGGPGQGGQGGGQNVNP
LNMGALTMPMLAALSQASWGLLGNLQQQNQDGPQGQGGYNQGGQPNQGHPNNPPPGHGGG
QGGWGSSSGGWGDGGQGGSWGQSQGRGGDKYNRYDM
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atggtcaacatgagttgctacatccaagtttgtgaggatgagaatgaagagcccattgag
atccccaccgaagaagatggcacattatccctatcgacattagttgcgcagtttcctggg
gcttgcggccttaaatatcgccatcccgagagcaggggattacgtggtgttcgtttgatt
gatggacgtctgcatcctccagatgaagggtggaacttcatctttgtgtgtgtgtttccc
aaaggtgaggatagatcatgcaattaccagatgaacgaggatatgaaatcaggctgcatc
gatggagttatgaaagaaaacaaaaggaagtccgatgaccacctggagagctccatgtcg
aaaaccaagcgtatggaaagcaagcagcgttgttcagacttgattgtgttgggacttcca
tggaaaaccacagagaaggagctcagagagtactttgaaccttttggtgaagtcttgatg
gcacaggtgaagaaagaccccaagactggccaaagcaagggatttggctttatcaggttt
ggtagttatgattctcaagttagagtactttctcagaggcacatgattgatggacgactg
tgtgatgttaagatccccaactccaaggaaggtatggtgcaacaagttaatagcaaagtc
ttcattggtcgttgcactgaagacataacagcagatgatctccgagaatacttcagcaag
tttggtgaggtcaccgatgtttttattcctaagccatttagggcctttgcttttgtcaca
tttttagatcctgaagtagcacagaccctatgtggtgaagaccatattgtcaaaggaaca
tctgttcatgtgtccaacgctgccccaaagggtgatccaaaccgtggaccatttgggcgt
ggtggacgtatggatgggcgaggctatggtcaaggtggctatgggcagggcatgaacaat
ggtggtggctggaatcaagggggaaatcgggaaatgcctaacttggctgctttgggtaca
tctctgggtttgggtggacctggacagggtggacaaggtggtgggcagaatgtgaatcct
cttaatatgggagcactaaccatgcccatgttagctgcccttagccaagctagctggggt
ctgttaggcaacttgcagcaacagaatcaggatggtcctcagggccagggtggttacaat
cagggagggcagcccaatcagggacatccaaataatcccccaccaggtcacggaggtggc
caaggtggctggggatccagttctgggggttggggagatggaggccagggtggctcatgg
ggacagtctcagggtaggggaggagacaagtacaacaggtatgatatgtaa
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