KEGG   Candidatus Methylopumilus rimovensis: FIT61_03255
Entry
FIT61_03255       CDS       T10495                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
mrk  Candidatus Methylopumilus rimovensis
Pathway
mrk03030  DNA replication
mrk03410  Base excision repair
mrk03420  Nucleotide excision repair
mrk03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mrk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    FIT61_03255 (ligA)
   03410 Base excision repair
    FIT61_03255 (ligA)
   03420 Nucleotide excision repair
    FIT61_03255 (ligA)
   03430 Mismatch repair
    FIT61_03255 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mrk03032]
    FIT61_03255 (ligA)
   03400 DNA repair and recombination proteins [BR:mrk03400]
    FIT61_03255 (ligA)
Enzymes [BR:mrk01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     FIT61_03255 (ligA)
DNA replication proteins [BR:mrk03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     FIT61_03255 (ligA)
DNA repair and recombination proteins [BR:mrk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     FIT61_03255 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     FIT61_03255 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     FIT61_03255 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      FIT61_03255 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 BRCT_2 PTCB-BRCT Nlig-Ia HHH 5_3_exonuc
Other DBs
NCBI-ProteinID: QDD13470
UniProt: A0AAF1D7L6
LinkDB
Position
637239..639254
AA seq 671 aa
MEAKKENIKKKIEELIEKINTFDYQYYVLDNPSISDFEYDKIFRSLVDLENANPDLIKPD
SPTQRVGGEALEAFESVIHRQAMLSLNNAFEEDELIAFDKRIKDDIGIDEVEYAVEPKFD
GLAITLTYENGIFVQGATRGDGYTGENVTHNLKTIRSIPTKVNHPNPPKILEVRGEVLML
KKDFELLNKKQESLGEKKFANPRNAAAGSLRQLDPKITAKRPLTFFSYGLGVCEPNLNLK
THTETIQLLKQFNLPISDLSVSVKGIKGLKSFYEKVLKLRDSLTYDIDGVVYKVNSFNYQ
NELGFVSRAPRWAIAHKFPAEEALTEILDIDVQVGRTGAITPVARLKPVFVGGVTVTNAT
LHNEDEMIRKDVHIGDIVSVRRAGDVIPEIVRVLIDKRPKIIKKFKMPTACPECGSPLIR
IDDEAVIRCSGGLVCPAQQKQSIIHFASRKAMDIEGLGDKSVEQLVAVGLIHELPDIYKL
ELKQLINLDRMAEKSGQNLLDAIEKSKKTTLPRFIYALGIRNVGESTAKDLASFYGELDE
VMKQTEESLQLVPDIGPTVAKSISDFFKQNKNREVIQSLIKFGVNWPKHDIQKSTSGIFA
AKTFVLTGTLPSMSREEAKSIIEMNGGKVAGSVSKKTDYVVAGSDAGSKLTVAQELGVKV
ISQDELLKLID
NT seq 2016 nt   +upstreamnt  +downstreamnt
atggaagccaaaaaagaaaatattaagaaaaaaattgaagaattaatcgaaaagataaat
acattcgattatcaatattacgttttagacaatccctctatttcagattttgaatacgat
aaaatttttagatcgcttgttgatctagaaaatgcaaatcctgatttaattaaaccagat
tctcccacccagcgggtaggtggtgaggccctagaagctttcgagagtgttatccatcgt
caagcaatgttatctttaaataatgcttttgaagaagatgagcttattgctttcgataaa
cgtattaaagatgatatcggcattgatgaagtggaatatgctgttgagccaaaatttgat
ggtctcgcaattacattaacttatgaaaatggcattttcgttcaaggcgctacacgaggc
gatggttatactggagagaatgtcacgcacaatttgaaaactattcgctcaatacccact
aaagttaatcatccaaacccacccaaaattttagaagtgagaggtgaggttttaatgcta
aaaaaagattttgaattactcaataaaaaacaagagtctttaggcgaaaaaaaatttgca
aatcccagaaatgctgcggcaggaagcttaagacagcttgatccgaaaataaccgcaaaa
agaccattaacattcttttcatatggtcttggtgtatgcgaacctaatttaaacttaaaa
acgcatacagaaacaattcagcttttaaaacaatttaatttaccaatttctgatttatca
gtaagcgttaagggtataaaaggtttaaagagcttttatgagaaagtgttaaaacttaga
gattccttaacttatgacattgatggtgtggtttataaagtaaattcttttaattatcaa
aatgaattaggttttgtatcacgagctcctcgatgggcaattgctcataaatttccagca
gaagaagctttaactgaaattttagatattgatgttcaagtaggccgtacaggagctata
acacccgtcgctcgtttgaagccagtttttgttggtggggttaccgtcacgaatgcaact
cttcataacgaagacgaaatgattcgtaaggacgtacatattggtgacattgtaagtgtt
cgaagagcaggggatgtaattcctgagatcgtaagagtgcttattgacaaacgaccaaag
ataatcaaaaaatttaaaatgccaactgcatgcccagagtgcggttcacctcttattcga
atagatgatgaagctgttattcgatgctcaggcggcctggtttgtccagcccaacagaaa
caatccattattcactttgcctcacgaaaggctatggatatagaaggtttaggagacaaa
tctgttgaacagttagtggctgttggtttaattcatgaattacccgatatctataagctg
gagcttaaacaattaattaaccttgatcgtatggcagaaaaatcaggtcaaaacttattg
gatgcaattgaaaaaagcaaaaaaactacattacctcgatttatctatgcgcttggtatt
cgtaacgtaggcgaatcaaccgctaaagatcttgctagtttctatggggagttagatgag
gttatgaaacagacagaagagagcttgcaacttgtacctgatattggccctacagttgca
aaatctatcagtgattttttcaagcaaaataagaatagagaagtgatccaatcgttaata
aaatttggcgttaattggcccaaacacgatatacaaaaatccacctctggaatttttgca
gctaagacttttgttcttacaggaactttgccttcgatgtcacgcgaagaagctaaatca
attattgaaatgaatggtggaaaggttgcgggtagtgtctctaaaaaaactgattatgtt
gtcgcaggatcagatgccggaagtaaattaactgtcgcacaagaacttggtgttaaagtc
atttcccaagatgaacttttaaaacttatagattaa

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