Candidatus Methylopumilus rimovensis: FIT61_03255
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Entry
FIT61_03255 CDS
T10495
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mrk Candidatus Methylopumilus rimovensis
Pathway
mrk03030
DNA replication
mrk03410
Base excision repair
mrk03420
Nucleotide excision repair
mrk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mrk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FIT61_03255 (ligA)
03410 Base excision repair
FIT61_03255 (ligA)
03420 Nucleotide excision repair
FIT61_03255 (ligA)
03430 Mismatch repair
FIT61_03255 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mrk03032
]
FIT61_03255 (ligA)
03400 DNA repair and recombination proteins [BR:
mrk03400
]
FIT61_03255 (ligA)
Enzymes [BR:
mrk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FIT61_03255 (ligA)
DNA replication proteins [BR:
mrk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FIT61_03255 (ligA)
DNA repair and recombination proteins [BR:
mrk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FIT61_03255 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FIT61_03255 (ligA)
MMR (mismatch excision repair)
DNA ligase
FIT61_03255 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FIT61_03255 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
BRCT_2
PTCB-BRCT
Nlig-Ia
HHH
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QDD13470
UniProt:
A0AAF1D7L6
LinkDB
All DBs
Position
637239..639254
Genome browser
AA seq
671 aa
AA seq
DB search
MEAKKENIKKKIEELIEKINTFDYQYYVLDNPSISDFEYDKIFRSLVDLENANPDLIKPD
SPTQRVGGEALEAFESVIHRQAMLSLNNAFEEDELIAFDKRIKDDIGIDEVEYAVEPKFD
GLAITLTYENGIFVQGATRGDGYTGENVTHNLKTIRSIPTKVNHPNPPKILEVRGEVLML
KKDFELLNKKQESLGEKKFANPRNAAAGSLRQLDPKITAKRPLTFFSYGLGVCEPNLNLK
THTETIQLLKQFNLPISDLSVSVKGIKGLKSFYEKVLKLRDSLTYDIDGVVYKVNSFNYQ
NELGFVSRAPRWAIAHKFPAEEALTEILDIDVQVGRTGAITPVARLKPVFVGGVTVTNAT
LHNEDEMIRKDVHIGDIVSVRRAGDVIPEIVRVLIDKRPKIIKKFKMPTACPECGSPLIR
IDDEAVIRCSGGLVCPAQQKQSIIHFASRKAMDIEGLGDKSVEQLVAVGLIHELPDIYKL
ELKQLINLDRMAEKSGQNLLDAIEKSKKTTLPRFIYALGIRNVGESTAKDLASFYGELDE
VMKQTEESLQLVPDIGPTVAKSISDFFKQNKNREVIQSLIKFGVNWPKHDIQKSTSGIFA
AKTFVLTGTLPSMSREEAKSIIEMNGGKVAGSVSKKTDYVVAGSDAGSKLTVAQELGVKV
ISQDELLKLID
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaagccaaaaaagaaaatattaagaaaaaaattgaagaattaatcgaaaagataaat
acattcgattatcaatattacgttttagacaatccctctatttcagattttgaatacgat
aaaatttttagatcgcttgttgatctagaaaatgcaaatcctgatttaattaaaccagat
tctcccacccagcgggtaggtggtgaggccctagaagctttcgagagtgttatccatcgt
caagcaatgttatctttaaataatgcttttgaagaagatgagcttattgctttcgataaa
cgtattaaagatgatatcggcattgatgaagtggaatatgctgttgagccaaaatttgat
ggtctcgcaattacattaacttatgaaaatggcattttcgttcaaggcgctacacgaggc
gatggttatactggagagaatgtcacgcacaatttgaaaactattcgctcaatacccact
aaagttaatcatccaaacccacccaaaattttagaagtgagaggtgaggttttaatgcta
aaaaaagattttgaattactcaataaaaaacaagagtctttaggcgaaaaaaaatttgca
aatcccagaaatgctgcggcaggaagcttaagacagcttgatccgaaaataaccgcaaaa
agaccattaacattcttttcatatggtcttggtgtatgcgaacctaatttaaacttaaaa
acgcatacagaaacaattcagcttttaaaacaatttaatttaccaatttctgatttatca
gtaagcgttaagggtataaaaggtttaaagagcttttatgagaaagtgttaaaacttaga
gattccttaacttatgacattgatggtgtggtttataaagtaaattcttttaattatcaa
aatgaattaggttttgtatcacgagctcctcgatgggcaattgctcataaatttccagca
gaagaagctttaactgaaattttagatattgatgttcaagtaggccgtacaggagctata
acacccgtcgctcgtttgaagccagtttttgttggtggggttaccgtcacgaatgcaact
cttcataacgaagacgaaatgattcgtaaggacgtacatattggtgacattgtaagtgtt
cgaagagcaggggatgtaattcctgagatcgtaagagtgcttattgacaaacgaccaaag
ataatcaaaaaatttaaaatgccaactgcatgcccagagtgcggttcacctcttattcga
atagatgatgaagctgttattcgatgctcaggcggcctggtttgtccagcccaacagaaa
caatccattattcactttgcctcacgaaaggctatggatatagaaggtttaggagacaaa
tctgttgaacagttagtggctgttggtttaattcatgaattacccgatatctataagctg
gagcttaaacaattaattaaccttgatcgtatggcagaaaaatcaggtcaaaacttattg
gatgcaattgaaaaaagcaaaaaaactacattacctcgatttatctatgcgcttggtatt
cgtaacgtaggcgaatcaaccgctaaagatcttgctagtttctatggggagttagatgag
gttatgaaacagacagaagagagcttgcaacttgtacctgatattggccctacagttgca
aaatctatcagtgattttttcaagcaaaataagaatagagaagtgatccaatcgttaata
aaatttggcgttaattggcccaaacacgatatacaaaaatccacctctggaatttttgca
gctaagacttttgttcttacaggaactttgccttcgatgtcacgcgaagaagctaaatca
attattgaaatgaatggtggaaaggttgcgggtagtgtctctaaaaaaactgattatgtt
gtcgcaggatcagatgccggaagtaaattaactgtcgcacaagaacttggtgttaaagtc
atttcccaagatgaacttttaaaacttatagattaa
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