Metabacillus rhizosphaerae: WCV66_01680
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Entry
WCV66_01680 CDS
T10831
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mrl Metabacillus rhizosphaerae
Pathway
mrl03030
DNA replication
mrl03410
Base excision repair
mrl03420
Nucleotide excision repair
mrl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mrl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
WCV66_01680 (ligA)
03410 Base excision repair
WCV66_01680 (ligA)
03420 Nucleotide excision repair
WCV66_01680 (ligA)
03430 Mismatch repair
WCV66_01680 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mrl03032
]
WCV66_01680 (ligA)
03400 DNA repair and recombination proteins [BR:
mrl03400
]
WCV66_01680 (ligA)
Enzymes [BR:
mrl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
WCV66_01680 (ligA)
DNA replication proteins [BR:
mrl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
WCV66_01680 (ligA)
DNA repair and recombination proteins [BR:
mrl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
WCV66_01680 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
WCV66_01680 (ligA)
MMR (mismatch excision repair)
DNA ligase
WCV66_01680 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
WCV66_01680 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
RNA_pol_A_CTD
HHH
RNA_ligase
Nlig-Ia
BRCT_2
MEIOC
Motif
Other DBs
NCBI-ProteinID:
WXB89042
UniProt:
A0ABZ2MUW0
LinkDB
All DBs
Position
complement(333972..335978)
Genome browser
AA seq
668 aa
AA seq
DB search
MDKQSANKLARELHELINTYNYEYNVLDKPSVPDSEYDRLMQELLKLEEAFPELKTSDSP
TQRVGGTVLAAFQKVVHKTPMLSLGNAFNEADLRDFDRRVKQSVGDDVQYVVELKIDGLA
VSLRYENGLFVQGATRGDGTTGEDITENLKTIRSIPLRLKKELSFEVRGEAFMPKKSFEK
LNELRLQLEEEPFANPRNAAAGSIRQLDPKIAAKRNLDIFVYSIADLGGTGVEKHSEALD
LLEEVGFKTNQERRKCETIEEVLTIIEDLQEKRANLSYDIDGIVIKVDSLAQQEELGFTA
KSPRWAIAYKFPAEEVMTKLVDIELSVGRTGVITPTALLEPVRVAGTTVQRASLHNEDLI
REKDIKIGDTVVVKKAGDIIPEVVNVLIDLRTGEEQTFSMPTHCPACESELVRIEGEVAL
RCINPQCPAQIKEGLIHFVSRNAMNIDGLGERVVAQLFQEGLIKDVADLYRLTRDQLLEL
ERMGEKSTDNLLNAIVQSKENSLERLLFGLGIRHVGAKAAKTLAQEFETIEILQQASKDE
LIAINEIGDKMADAVVTYFDNPDVQYLVNELKSLGVNTTYKGPKLIRIEDSDSYLAGKTV
VLTGKLEQLSRNEAKEGIEALGGKVTGSVSKSTDLVVAGESAGSKLKKAQELNIEIWDEA
RLFDELNK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggataaacaatcagcaaataaactagctcgcgagctccatgagctaattaacacttat
aattatgaatacaatgttttagataaaccaagcgtgcctgattctgaatatgaccgcctt
atgcaggaactattaaagcttgaagaagcatttcctgaattgaaaacctcagattccccg
acacaaagagtcgggggtactgtgttagctgcttttcaaaaggttgttcacaaaacacca
atgctaagcttaggtaacgcttttaatgaggctgatttacgtgattttgaccgtcgagta
aaacagtctgtaggtgacgatgttcaatatgttgttgaattgaaaattgatggtttagcg
gtttctctaagatatgaaaatggactgtttgtacaaggtgctacgcgaggagacggtaca
acaggtgaggatattacggaaaacctcaaaacgatacgctccattccacttagattgaag
aaggaattgtcctttgaagtacgtggtgaggcatttatgccgaaaaagtcctttgagaag
ttgaatgaattacgattacaacttgaagaagagccattcgcaaacccacgtaatgctgca
gctggttccattagacagctagaccctaaaatagctgcaaagcgtaatttagatatcttc
gtatacagtattgcagatttaggtggaacaggtgttgaaaaacatagtgaagcactagat
ctactagaagaagtaggatttaaaacaaatcaagaacgaagaaaatgtgaaacgattgaa
gaagtcctcaccatcatagaagatcttcaagaaaaaagagcaaatttatcttacgatatt
gatggtatcgttattaaggtggattctctcgctcaacaggaagagcttgggtttactgct
aagagtccacgttgggccattgcttacaaatttccagcagaagaagttatgacaaagcta
gtggatattgaattaagtgtaggtcggactggtgtcattactccaacagctttattagag
ccagttcgggttgcgggtacaactgttcaacgtgcctcacttcataatgaagatttaatt
agagaaaaggatattaaaattggtgatacggttgttgtcaaaaaagcaggtgatatcata
cctgaggttgtcaatgtgctaatagatctgcgcactggtgaagaacaaaccttttcgatg
cctacacattgccctgcttgtgaaagtgagctagttcgtattgaaggtgaggttgccctt
cgttgtattaatccacaatgtccggctcaaattaaagaaggtcttattcattttgtatca
aggaatgcaatgaacattgatggtcttggtgaaagagttgtagcacaattgtttcaagaa
ggattaattaaggatgttgcagatttatacagattaacgagagatcagcttctcgagctt
gagagaatgggagaaaaatctaccgataatttattaaatgcaattgtacaatcaaaagaa
aactcacttgaaagactattgtttggtttagggattcgccatgttggtgctaaagccgca
aaaacattagctcaagaatttgaaacaattgaaattcttcagcaagcttcaaaggatgag
cttattgcgataaatgaaataggagacaaaatggctgatgcagttgtcacttattttgat
aacccagatgtgcagtatttagtaaatgagcttaaatctctaggtgtaaatacgacatac
aagggaccaaagctgattaggattgaagacagtgattcatacctagctggaaagactgtt
gtattaacagggaagcttgaacagctatcaagaaatgaagcaaaagaaggtattgaagca
cttggtggtaaagtaaccggtagcgtaagtaaaagtacagatcttgtggtagctggtgaa
tcagcaggaagcaagctaaagaaagcccaagaattaaatatagaaatatgggacgaagct
cggctctttgatgaactaaataaataa
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