Mucilaginibacter robiniae: HH214_15285
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Entry
HH214_15285 CDS
T08554
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mrob
Mucilaginibacter robiniae
Pathway
mrob03030
DNA replication
mrob03410
Base excision repair
mrob03420
Nucleotide excision repair
mrob03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mrob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HH214_15285 (ligA)
03410 Base excision repair
HH214_15285 (ligA)
03420 Nucleotide excision repair
HH214_15285 (ligA)
03430 Mismatch repair
HH214_15285 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mrob03032
]
HH214_15285 (ligA)
03400 DNA repair and recombination proteins [BR:
mrob03400
]
HH214_15285 (ligA)
Enzymes [BR:
mrob01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HH214_15285 (ligA)
DNA replication proteins [BR:
mrob03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HH214_15285 (ligA)
DNA repair and recombination proteins [BR:
mrob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HH214_15285 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HH214_15285 (ligA)
MMR (mismatch excision repair)
DNA ligase
HH214_15285 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HH214_15285 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
zf-NADH-PPase
Auto_anti-p27
5_3_exonuc
HHH_8
RNA_ligase
HVO_2753_ZBP
Trm112p
Motif
Other DBs
NCBI-ProteinID:
QJD97135
UniProt:
A0A7L5E1T9
LinkDB
All DBs
Position
complement(3460585..3462597)
Genome browser
AA seq
670 aa
AA seq
DB search
MLPNEAKNRIDALSAELRQHNYNYYVLAQPTISDFDFDQKLRELADLEKQFPEYIDLESP
TQKVGGEVTKEFQTVRHRWPMLSLGNTYNEQELHDFDQRIRKAIGDNFEYVCELKFDGLS
MSMTYEQGKLARAVTRGNGVEGDDVTTNVRTIHSVPKKLTSGNYPNFFEIRGEVLMHRKA
FERLNNERIESGEIAYANPRNFASGTMKLQDSAEVAKRPLDCFLYFLYTDKPLFKTHWES
IQAVKSWGFHVSEHTRLCHSLKEVLDFIAEWELKRFDLSFDIDGIVLKVNNYAQQQELGF
TAKVPRWAISYKYKAEQVETILEDVEYNVGRTGAVTPVAHLKPVLLAGTTVKRATLHNAN
EILRLDLHEGDSVYVEKGGEIIPKIISVNPAKRRPDAPPVSYRTTCPACGTPLERKEGEA
AFYCPNDEACPPQIVSRMQHFVSRKAMNIDGLGDETIETLYNRNFIRHISDIYELHNRKP
ELQQMDRFGEKSILNMLAGIEKSKQMPFEKVLFGLGIRYIGETVARKLVAHFKTLERLKA
ASLEELTAVDEIGERIAQSLVEYFSDPAHQEELQKLQSQGLQFISEAKEVTLHSDKLSGK
TFVISGVFETRSRDELKELIEQNGGKMLSSISAKLNYLVAGDNMGPSKLEKANKLNIPII
SDEELLRMIQ
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgttgccaaacgaagcaaaaaaccgtatagatgctttatcagctgaactaagacagcac
aattataactattatgtgctggcccagcctaccatatcagactttgattttgaccaaaaa
ttacgtgagctggccgatctggaaaagcagtttcctgaatatatagatcttgaatcgccc
actcaaaaagtaggtggcgaggttaccaaagaattccagaccgtaaggcaccgctggccc
atgctctcgctaggtaatacctacaacgagcaggaactgcatgattttgatcaacgcatt
cgcaaagccattggcgataattttgaatacgtatgtgagctgaagtttgatggcctctcc
atgagtatgacttatgagcagggtaaactagcccgcgctgtaacccgtggtaacggtgta
gaaggtgacgatgtaacgactaatgtacgtaccatccacagcgtacccaaaaagctgact
tctggcaattaccccaacttttttgaaatacgcggcgaagtgctgatgcaccgtaaagct
tttgaacgtcttaataacgaacgtattgaaagtggtgaaatagcttatgctaacccacgg
aactttgcctcaggcactatgaagctgcaagattcggccgaggtggccaaacggccgcta
gattgctttttatactttctatacaccgataaaccgttgtttaaaacccattgggaaagt
atacaggcagtaaaaagctggggctttcatgttagtgaacatacccgactgtgccatagc
ttaaaagaagtgcttgattttattgccgaatgggagctgaagcgttttgacctgagcttt
gatattgatggtattgtactgaaagtaaataactatgctcaacaacaggaattgggattt
acagccaaagtacctcgttgggctatatcttacaagtataaagccgaacaggtagaaact
atactagaggatgtagaatacaatgtaggccgcactggtgctgtaaccccagtagcccac
ttgaaacctgtactcctagccggcactacggtaaaacgtgccacccttcataacgccaat
gaaattttacgactggatttacacgaaggtgattctgtttatgtagaaaagggaggcgag
attattccgaaaattattagtgttaacccagctaaacgtcggcctgatgcaccgcctgtt
agttaccggactacctgcccggcttgcggcacaccactggaacgtaaggaaggtgaggct
gctttttactgccccaatgatgaagcttgcccgccacaaattgtaagccgtatgcagcac
tttgtgagccgaaaagctatgaatattgatggtttgggcgatgagactattgaaaccctg
tataatagaaatttcatccgccatatcagtgatatttatgagctgcataatcgtaaacca
gagttgcagcagatggaccgttttggcgaaaaatcaattctgaacatgctggctggtatt
gaaaaatccaaacagatgccttttgaaaaggtattgtttggcttaggcatccgttacata
ggtgaaacggtggcacgcaaactggtagctcattttaaaactttagaacgcctgaaagca
gccagtttagaagaactaactgcagttgatgaaattggcgaacgcatagcacaaagcctg
gtagaatacttcagcgatcctgcacaccaagaggaattacaaaaattgcaaagccagggc
ttacagtttatatcggaagctaaagaggtaaccttgcacagcgataagctatcaggcaaa
acctttgtgatttcgggcgtatttgaaacccgctctcgggatgaactaaaagaactcatt
gaacaaaatggcggcaaaatgctgagcagcatatcggccaaactgaactacctggtagca
ggcgacaatatgggcccgtccaagttggaaaaggctaataaattaaacattccgataatt
agtgacgaagaattattgaggatgattcaataa
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