Methylocystis rosea: EHO51_09975
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Entry
EHO51_09975 CDS
T05721
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mros
Methylocystis rosea
Pathway
mros03030
DNA replication
mros03410
Base excision repair
mros03420
Nucleotide excision repair
mros03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mros00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EHO51_09975 (ligA)
03410 Base excision repair
EHO51_09975 (ligA)
03420 Nucleotide excision repair
EHO51_09975 (ligA)
03430 Mismatch repair
EHO51_09975 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mros03032
]
EHO51_09975 (ligA)
03400 DNA repair and recombination proteins [BR:
mros03400
]
EHO51_09975 (ligA)
Enzymes [BR:
mros01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EHO51_09975 (ligA)
DNA replication proteins [BR:
mros03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EHO51_09975 (ligA)
DNA repair and recombination proteins [BR:
mros03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EHO51_09975 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EHO51_09975 (ligA)
MMR (mismatch excision repair)
DNA ligase
EHO51_09975 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EHO51_09975 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Zn_Ribbon_TF
Zn_ribbon_TFIIB
HHH
Motif
Other DBs
NCBI-ProteinID:
AZG77032
UniProt:
A0A3G8M767
LinkDB
All DBs
Position
complement(2053560..2055653)
Genome browser
AA seq
697 aa
AA seq
DB search
MAKSPPEPSLSEARAEHARLHEELTAHDRRYYREDAPTISDADYDALRRRYEELEKACPE
LATPQSLTKTVGAKPSEKFAKVKHAVPMLSLGNVFSDEEVLEFVARVRRFLGLGESPLRF
TFEPKIDGLSCSLRYEKGHLVQAATRGDGYEGEDVTANVRTIDEIPQRLRGDHSDVFEVR
GEVYMTHKDFAALNARQKDAGKTLFANPRNAAAGSLRQLDQKITASRPLHFFAYGWGETS
ALPANTQLGVLEALRRYGLPVNPLTTLCEDAEDMLAHYRSIETQRATLGYDIDGVVYKVD
DIVLQERLGFVSRAPRWAVARKFPAERATTILRDIEIQVGRTGALTPVARLEPVTVGGVV
VQNATLHNEDEIARKDIRIGDTVVVQRAGDVIPQIVEVVKEQRPHGAKPYQFPHVCPRCG
SAALREIDEKTGEADVVRRCTGSLVCPAQAIERLKHFASRNAMDIEGLGDKQIEFFYDEG
LIKTASDIFALAEREAQMSPRLAEREGYGETSVRNLFAAIEARRRAPINRFIFALGVRHV
GETNARRLARHFGDFESLRETARDAALGSEARARIDSIDGVGPAVAEALHDFFAEPHNER
ELDALLKQITLEPMPAVASTSPVSGKTVVFTGALERLTRDEAKAQAERFGAHVAASVSKK
TDLVVAGPGAGSKLKKAAELGIEVITEDEWFKRTGQG
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggccaagtcgcctcccgagccttccctttccgaagcgcgcgccgaacatgcgcggctg
catgaagaactcacggcgcacgatcggcgctattaccgggaagacgcgccgacgatctcg
gacgccgactatgacgcgctgcgccgtcgttacgaggaattggaaaaggcttgccccgaa
ctcgcgaccccgcagtcgctgacgaagacggtcggcgccaagccgtctgaaaaattcgcc
aaagtgaagcacgccgtgccgatgctctcgctcggcaacgtcttctcggacgaagaggtc
ctggaattcgtcgcgcgcgtgcgccgatttcttggcctgggtgaaagcccgctgcgcttc
acctttgagccgaagatcgacgggctgtcctgttcgctgcgctacgagaaaggccatctc
gtgcaggcggcgacgcgtggcgacggctatgagggcgaagacgtcaccgccaatgtccga
accatcgacgaaatcccgcaacggctacgcggcgatcattccgacgtttttgaagtgcgc
ggcgaagtctatatgacgcacaaggatttcgccgcgctcaatgcacggcagaaggacgcg
ggcaaaacgctcttcgccaatccgcgcaacgccgccgccggttccctgcggcagctcgat
caaaagatcaccgcatcccgtccgctgcatttcttcgcctatgggtggggcgagacgagc
gcgctgcctgcgaatacgcaactgggcgtgcttgaggcgctgcgccgttacgggttgccg
gtcaatccgctgacgacgctctgcgaggacgcggaagacatgctggcgcattaccgttcg
atcgaaacgcaacgcgcgacgctcggctatgacatcgacggcgttgtttacaaggtcgac
gacatcgtgctgcaggagcggcttggatttgtctcgcgcgcgccgcgctgggccgtcgcg
cgcaagttccctgccgaacgcgccacgacaattttgcgcgatatcgagattcaggtgggg
cgcacgggcgccttaacgccggtcgcgaggctcgagccggtgacggtcggcggcgtcgtc
gtgcagaacgccacgctgcacaacgaagacgagatcgcacgcaaggatattcgcatcggc
gacaccgtcgtcgtgcagcgcgccggcgacgtcattccgcagattgtcgaagtggtgaag
gagcagcgtccgcacggcgcgaagccctatcagtttccccatgtctgcccgcgctgcggc
tcggcggcgctgcgcgaaatcgacgaaaagaccggcgaggccgacgtcgtgcgccgctgc
accggatcgcttgtttgtccggcgcaggcgatcgagcgcctaaagcatttcgcctcgcgc
aacgccatggacattgaaggtctcggcgacaagcagatcgaatttttctacgatgaaggg
ctcatcaaaaccgcttccgacatttttgcgcttgccgagcgcgaagcgcagatgtcgccg
cgactcgcggaacgcgagggctatggcgagacctcggtgcgcaacctctttgcggcgatc
gaggcgcggcgaagggcgccgatcaatcgcttcatctttgcgcttggcgtgcgccacgtg
ggcgagaccaatgcgcgccggctggcccgccatttcggcgacttcgagtcgttgcgcgag
acggcgcgcgatgcggcgttggggagcgaagcgcgcgcccgcatcgattcgatcgacggc
gtcggccctgctgtcgccgaagcgctgcacgattttttcgccgagccgcataatgagcgc
gaactcgacgcgctgctcaaacaaatcacgctggagccgatgccggcggtggcgtccacg
tcgcccgtctccggcaagacggtggtgttcaccggcgcgctagagcggctcacgcgcgac
gaagcgaaggcgcaggccgagcgtttcggcgcgcatgtcgcggcgtcggtgtcgaagaaa
accgatcttgtggtcgccggtcccggcgcgggctcgaagctcaaaaaggctgcggagttg
gggatcgaagtgattaccgaagacgagtggtttaagcggacggggcaggggtaa
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