Methylomonas rapida: NM686_009875
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Entry
NM686_009875 CDS
T08781
Name
(GenBank) helix-hairpin-helix domain-containing protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mrp
Methylomonas rapida
Pathway
mrp03030
DNA replication
mrp03410
Base excision repair
mrp03420
Nucleotide excision repair
mrp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mrp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NM686_009875
03410 Base excision repair
NM686_009875
03420 Nucleotide excision repair
NM686_009875
03430 Mismatch repair
NM686_009875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mrp03032
]
NM686_009875
03400 DNA repair and recombination proteins [BR:
mrp03400
]
NM686_009875
Enzymes [BR:
mrp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NM686_009875
DNA replication proteins [BR:
mrp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NM686_009875
DNA repair and recombination proteins [BR:
mrp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NM686_009875
NER (nucleotide excision repair)
GGR (global genome repair) factors
NM686_009875
MMR (mismatch excision repair)
DNA ligase
NM686_009875
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NM686_009875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
DNA_pol_lambd_f
Motif
Other DBs
NCBI-ProteinID:
WAR46798
LinkDB
All DBs
Position
complement(2104095..2106050)
Genome browser
AA seq
651 aa
AA seq
DB search
MLSKKQKDLVFGAALNFDNLSEERFCELCRHPERISNASDEELTGFLQIANALYRGGEPV
ISDADYDFIYLAELKARHPDHPLLESVEPEPVFAGKTVDLPVIMLSTDKAYSLDDVERWG
ARIEKAAAELGKDFTRLTFKVTPKLDGYAAYDDGNLFYTRGDGRKGQDISRVFERGLQVA
HQGRRGLGAGEIVVSRSYFDEKLAEFFDNPRNFQASVIKEKELDTHAEQAILDHAAVFYP
FALLPSWTGSWSALILDFASIVKDIWNKVDYDVDGVILEIVDDELKQYMGATRHHHRWQL
AYKENLATAEVRILNVVPQTSRSGRITPVAELEPTRLSGALLSRATAHHYKMVLDKGIGP
GALIRLARSGEVIPKIEEVLSPAEPRVPTHCPSCGHELIWDNDYLLCPNNLACPAQISNS
MEHFFRVLKNNDGFGAATIKKLYAHGIRRVDEIYRLGTEQFESMGFGPKQSQNLVDQLAR
SRSETIDDWRFLAAFGVFRMGLGNCERLMRHHALTDVFALSEADIVAIEGFAEKTAAVII
EGFANIKPLFDTLMALGFNLQPSQNLAANTGHPLAGKSLVFTGTLHSGTRDELGKQAKAV
GAKVGSSVSAKTDYLIAGDNVGANKINAAREKGVTVIGEQAFLRLLAGETL
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgctaagcaagaagcaaaaagacctcgtgtttggagccgcactcaatttcgacaatcta
agcgaagaacgcttttgcgaactttgccggcatcccgagcggattagcaacgccagcgac
gaggaattgacggggttcttgcaaatcgccaatgccttgtatcgcggcggcgagcccgtc
atcagcgacgccgattatgattttatttatttggccgaactcaaagcccgtcatcccgac
catcccttgctggaaagcgtggaacctgaaccggtctttgccggtaaaaccgtcgatttg
ccggtcatcatgctgtcgaccgacaaagcctacagtctggatgacgtggaacgctggggc
gcccgcatcgaaaaggccgccgccgagctgggcaaggactttacgcgactcaccttcaag
gtcacgccaaaactggatggctatgcggcctacgacgacggcaacctgttctatacccgc
ggcgacggccgcaagggccaggacatcagccgggttttcgagcgcggactgcaagtcgcc
caccaaggccgacgcgggctgggcgccggcgaaatcgtcgtcagtcgcagctacttcgat
gaaaaactggccgaattctttgataacccgcgcaattttcaagccagcgtaatcaaggaa
aaagaactggacactcacgccgagcaagccattctggatcatgccgcggtgttttatccg
ttcgcgctgctgccgagctggacgggttcctggtctgcgttgatcctggattttgccagc
atagtcaaagacatctggaacaaggtcgattacgacgtcgacggcgtgattctggaaatc
gtcgacgacgaattaaagcaatacatgggcgcgacccgccaccatcaccgctggcagctc
gcctacaaggaaaatctcgccaccgccgaagtcagaattctaaacgtggtgccgcaaact
tcgcgctccggccgcatcacgccggttgcggaactggaaccgacccggctcagcggcgcc
ctgctctcccgcgccacggcacatcattacaaaatggtgctcgacaagggcataggccca
ggcgcgttgattcgcctggcccgctccggcgaggtgatccccaagatcgaggaagtcctc
agtcccgccgaaccgagggtgccgacgcactgccccagctgcggacatgaattgatctgg
gacaacgactatttattgtgtcccaacaatctggcctgtccggcgcagatcagcaacagc
atggagcatttttttcgggtcttgaaaaacaacgatggcttcggcgccgcgacgatcaaa
aaactttacgctcacggcatccgccgcgtcgatgaaatataccggctcggcaccgagcaa
ttcgaaagcatgggtttcggccccaaacaatcgcaaaacctggtcgatcaactggcgcgc
agtcgcagcgaaacgatcgatgattggcgctttctggcggctttcggcgtgttccggatg
gggctgggcaattgcgagcgcctgatgcggcatcatgccttgacggatgttttcgccttg
tccgaagcggatatcgtggcgatcgagggatttgcggaaaaaaccgccgccgtcattatc
gaaggttttgccaacatcaaacccttgttcgacacattgatggcactcggcttcaatttg
cagcccagccagaacctcgccgccaacacgggccatcccctggccggcaagtccctggtt
tttaccggcacgctgcatagcggcacgcgtgacgaactcggcaagcaagccaaagccgtg
ggcgcgaaagtcggttcgtcggtgtcggccaaaaccgattatctgatagcgggtgacaat
gtcggggccaacaaaatcaacgcggctcgcgaaaaaggcgtgacggtcattggcgaacag
gcgtttctacgcctgctggccggagaaacactatga
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