Marinobacterium rhizophilum: KDW95_11800
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Entry
KDW95_11800 CDS
T08609
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mrz
Marinobacterium rhizophilum
Pathway
mrz03030
DNA replication
mrz03410
Base excision repair
mrz03420
Nucleotide excision repair
mrz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mrz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KDW95_11800 (ligA)
03410 Base excision repair
KDW95_11800 (ligA)
03420 Nucleotide excision repair
KDW95_11800 (ligA)
03430 Mismatch repair
KDW95_11800 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mrz03032
]
KDW95_11800 (ligA)
03400 DNA repair and recombination proteins [BR:
mrz03400
]
KDW95_11800 (ligA)
Enzymes [BR:
mrz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KDW95_11800 (ligA)
DNA replication proteins [BR:
mrz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KDW95_11800 (ligA)
DNA repair and recombination proteins [BR:
mrz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KDW95_11800 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KDW95_11800 (ligA)
MMR (mismatch excision repair)
DNA ligase
KDW95_11800 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KDW95_11800 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
5_3_exonuc
Nlig-Ia
PTCB-BRCT
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
UTW10007
UniProt:
A0ABY5HF98
LinkDB
All DBs
Position
complement(2616786..2619161)
Genome browser
AA seq
791 aa
AA seq
DB search
MCSAVTIEQELRQLRDALNQHNYRYYVLDEPQVPDAEYDRLFQRLRALETEHPHLVTASS
PTQRVGASPLSAFSQVQHEMPMLSLDNAFNAEELRDFVRRVQERLKLAASDDIAFACEPK
LDGIAVSVLYEDGLLVRAATRGDGTTGEDITQNVRTLRSVPLQLNGTGWPRRLEVRGEIY
LPKAGFDALNERQRERDEKTFVNPRNAAAGSLRQLDARITADRPLEMCSYSTGVVSDDVE
LPPGHFETLQLLHRWGFRINPEMRLVQGAEGCLDYYQDLAARRDSLKYDIDGIVFKVNAR
AQQAELGFVSRAPRWAIAHKFPAQEEITRVQAVEFQVGRTGAVTPVARLEPVFVGGVTVS
NATLHNMDEIGRLDLRVGDTVVVRRAGDVIPQVVQVVTERRTGAETPVHVPEHCPECGSQ
VVRNQLVRMLKGKEELVDGTGFHCVGRLACRAQLSQAIIHFVSRRAMDIDGLGDKSVEQL
VERELVRSPADLYRLRINDFMALEGFAEVSSQKLYHAIQASKRVPLARFIYALGISEVGE
GTARVLAQNLGSLERIAAALPLVLTCLPEVGLGVAREIADFFEDEHNRQVIADLAALGVV
PEGSGELGVSQRGSVSLADLLAKLKVDKVGPVMAQHLAAHFGSLQALLEADEAQLEAVPK
LSKAAGKSLLEKLQDSDWCARVQALEAQLLAFGMHWSCEAEQAQADEVAVEPLSGQTWVL
TGTLELMTRDQAKDYLQSLGAKVSGSVSKKTDCVVAGPGAGSKLAKAQSLAVKVIDEGEF
VEQLQHYGITH
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgtgttcggctgtaacgattgagcaggaactgcggcaactgcgtgatgccctgaatcaa
cataattaccgttactatgtgctcgatgagccacaagtgccggacgccgaatatgaccgc
ctgttccagcgcctcagggcgctcgaaacggaacatccgcacctcgttaccgccagctcc
cctacccagcgtgtcggtgccagtcccctgtccgcctttagccaggtgcagcacgaaatg
ccgatgctgtcgctggacaatgcctttaatgccgaggaactgcgtgactttgtacgccgg
gtgcaggagcggctgaagcttgccgccagcgacgatatcgcctttgcctgtgagcccaag
ctggatggcattgccgtcagcgtgctgtacgaggatggcctgctggtgcgggccgcaacc
cggggcgatggcaccacgggggaggatattacccagaacgtgcgtacgcttcgcagtgtg
ccgctgcagcttaatggcactggctggccccgccggctggaagtccgtggcgagatttac
ctgcccaaggccggtttcgacgcgctgaatgaacgtcagcgcgagcgggacgagaaaacc
ttcgtgaatccgcgcaacgccgccgccggcagtctgcgccagctggatgcccgcattacg
gcggaccggccgctggaaatgtgcagttacagtaccggcgtggtctccgatgacgttgaa
ctccccccaggccatttcgaaaccctgcagctgctgcaccgctgggggtttcgcatcaac
ccagagatgcgcctggtacagggggcggagggttgcctggactattaccaggaccttgcc
gcccggcgcgacagcctgaaatatgacatcgatggcattgtcttcaaggtgaacgcgcgc
gcccagcaggctgagctgggcttcgtgtcccgcgccccgcgctgggccatcgcccacaag
ttcccggcccaggaagaaattacccgggtacaggcggtggagttccaggtgggtcgcact
ggcgcggtcacgccggtggcgcggctggagccggtgtttgtcggcggcgtgaccgtcagt
aatgccaccttgcacaatatggacgaaatcggccggctggatctgcgtgtcggtgacact
gtggtggtacgccgcgcaggggatgtgattccccaggtggtgcaggtggtgaccgagcgg
cgcacgggggcggaaacgccggtacatgttccggaacactgtcccgagtgtggttcacag
gtggtgcgcaaccagctggtgcgcatgcttaagggcaaggaagaactggtggatggcacg
ggctttcactgcgttggccgcctggcctgccgggcccagctgtcccaggccatcattcat
tttgtttcgcgccgggcgatggatatcgatggcctgggcgacaagagcgtcgagcagctg
gtagagcgggagctggtgcgctcacctgccgacctgtaccggctgcgtatcaatgacttc
atggcgctggagggctttgctgaagtctcatcgcagaaactgtaccatgcgatccaggcc
agcaagcgggtgccgctggcgcgcttcatttatgcactgggcatcagcgaagtgggtgaa
ggcacggcgcgggtgctggcgcagaacctcggcagcctggagcgcatagccgcagccctg
ccgctggtactgacctgcctgcccgaggtggggctgggcgtcgcccgcgagattgcggac
tttttcgaggatgaacataatcgccaggtgattgctgatctggcagcgctcggcgtggtg
ccagagggcagcggcgagctgggtgtgtcgcagcgcggcagtgtttcgctggcggacttg
ctggcaaagctgaaagtggacaaggtcggtccggtgatggcccagcacctggccgcccac
tttggctcgctgcaggcgctgctcgaagctgacgaggcgcagctcgaggccgtgccaaaa
ctgtccaaggctgccggcaaaagtctgctggaaaaactgcaggacagtgactggtgcgcc
cgggtgcaggccctggaggcgcagctgctggcgtttggcatgcactggagctgcgaagct
gaacaggcgcaagccgacgaggttgcagttgagcctttgagcggccagacctgggtgctc
accgggacactggagctgatgacgcgggatcaggccaaggattatttgcagtcgctcggc
gccaaggtgtcgggcagcgtatccaaaaaaaccgactgtgtggtggcgggcccgggcgca
ggctcgaagctcgccaaggcccagtcgctggcggtcaaggtgattgatgaaggagaattc
gttgaacagctccagcactatggcattacccattaa
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