Marivirga salinarum: QYS49_37860
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Entry
QYS49_37860 CDS
T10279
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
msaa Marivirga salinarum
Pathway
msaa03030
DNA replication
msaa03410
Base excision repair
msaa03420
Nucleotide excision repair
msaa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QYS49_37860 (ligA)
03410 Base excision repair
QYS49_37860 (ligA)
03420 Nucleotide excision repair
QYS49_37860 (ligA)
03430 Mismatch repair
QYS49_37860 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msaa03032
]
QYS49_37860 (ligA)
03400 DNA repair and recombination proteins [BR:
msaa03400
]
QYS49_37860 (ligA)
Enzymes [BR:
msaa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QYS49_37860 (ligA)
DNA replication proteins [BR:
msaa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QYS49_37860 (ligA)
DNA repair and recombination proteins [BR:
msaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QYS49_37860 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QYS49_37860 (ligA)
MMR (mismatch excision repair)
DNA ligase
QYS49_37860 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QYS49_37860 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
HHH
BRCT_2
PTCB-BRCT
HHH_3
HHH_8
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
WMN11293
UniProt:
A0AA51N9Z1
LinkDB
All DBs
Position
complement(3472240..3474255)
Genome browser
AA seq
671 aa
AA seq
DB search
MDKKAAEQKIQELSEKLHYYNYKYYQESVSEISDYEFDMMLKELIELEEQFPDLKTSDSP
SQRVGGDITKNFETVEHKIPMLSLGNTYSKEELDDFDGRVKRGLGDEEYEYFCELKFDGV
AISLHYENGKLIRGVTRGDGTKGDDITNNAKTIRTIPLKVRGTEFPEYFEARGEVFLPRE
AFNEINREREENGEALLANPRNAASGTLKMQDSGVVAKRKLDCYLYSYAGEDLPIDSHEE
GIKQLEKFGFNVSQNYKKCQNINEVFDFINEWEEKRHSLPVDTDGIVIKVNSLAQQEQLG
FTAKSPRWAIAYKYKAESSTTVLKEITYQVGRTGAVTPVANLEPVSLAGTTVKRASLHNA
NEIARLDLRVGDTVHVEKGGEIIPKITGVDLTKRDLGSSEVEYLKNCPECGTELVRAEGE
AVHYCPNKKGCPPQIKGSIEHYIQRKAADIDSMGERTIHMLYEKGLVNNVADLYDLTYEE
VFELEGFKELSSKNLLKGIEDSKQIPFENILFGLGIRFVGKTVAEKLAAHFKNIDNLSKA
SFEELIEVPEIGERIAQSVVEYFQDKDTIELIERLKSAGLQFEIKETVVEQKGNALEGKS
LVVSGVFEHYGRDEIKQVIKQYGGKVVSAISGKVDILVAGENMGPAKRQKAEKLGVKIID
ENEFRSLIKEN
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggataaaaaagcagccgaacaaaaaattcaggagttaagtgaaaagcttcattattat
aattataaatactatcaggaaagtgtttctgaaatttctgattatgagtttgatatgatg
ctaaaagagctcattgagttggaagagcaatttcctgacttgaaaacttccgattcccct
agtcagcgagtgggtggcgatatcactaaaaatttcgaaacggttgagcataaaatcccc
atgctttctttgggcaatacttattccaaagaagagttggatgattttgatggtagagta
aaaagaggattgggggatgaagagtatgaatatttctgtgagcttaaatttgatggtgta
gccatcagtttgcattatgaaaacggtaaattaataagaggagtaactcggggagatggg
actaaaggagatgatattaccaataatgctaaaaccatccgtactattcctctgaaagtg
agaggcacagaattccctgaatattttgaagctagaggtgaggtctttttgccaagagaa
gcttttaatgaaattaatagagagcgagaagaaaatggtgaagcccttttggcaaaccct
agaaatgcagcctctggaacattgaaaatgcaggattcaggagttgttgccaaaaggaaa
ttggactgctatttatattcctatgctggtgaagatttgcctatagattcccatgaagaa
ggaataaaacaattggagaaatttggttttaatgtttctcaaaattacaaaaagtgtcaa
aacatcaatgaggtatttgatttcatcaatgagtgggaggaaaaaagacattccttgccg
gttgatacagatggtattgtgataaaagtcaatagcctagctcagcaagaacaattaggt
tttacagcaaaaagtccgagatgggcgattgcttataaatacaaagcagaaagctccact
actgttttaaaagagattacctatcaggttggaagaacaggcgcagttaccccagtcgcc
aatttagaacctgtttctttggctggaacgaccgtgaaacgagcttcattgcataatgcc
aatgaaattgctcgactggacttaagggtaggtgatacagttcatgtggaaaaaggaggc
gaaattattccgaaaattactggagtagatttgaccaaaagagatttgggaagttctgag
gtggaatatctcaaaaactgtcccgaatgcggaacagaattagtaagggctgaaggagaa
gctgttcattattgccccaataaaaagggatgccctccacaaattaaaggatccatagaa
cattatattcagcgaaaagccgctgatattgattccatgggcgagcgcaccattcatatg
ttgtatgaaaaaggattggtaaataatgtagcggatctttatgatttgacttatgaggag
gtttttgagctagaaggctttaaagagttaagtagtaaaaatcttttaaaaggaattgaa
gactcaaagcaaatcccatttgaaaacatcttattcggattgggtatccgctttgttgga
aaaacggtagccgagaaattagcagctcattttaaaaatattgataatttgtcgaaagct
tcctttgaagaattgatagaagttcctgaaattggcgaacgaattgcccaaagcgtagtg
gaatattttcaggataaagatactattgaattgattgagcgtttgaaatcagcgggcctt
caatttgagatcaaagaaactgtagttgagcaaaaaggtaatgcgctggaaggcaagtct
ttggtggtttcaggagtatttgagcattacggaagagatgaaattaagcaagtaattaag
caatatggtggaaaagtagtttcggctatttcaggaaaagtagatatattagtggctgga
gaaaatatgggccctgccaaaaggcaaaaagcagaaaaactaggagtgaaaatcatcgat
gaaaatgaatttcgtagcctgataaaagaaaattaa
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