Metamycoplasma salivarium: NCTC10113_00990
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Entry
NCTC10113_00990 CDS
T07316
Symbol
lig_2
Name
(GenBank) NAD(+)-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
msai
Metamycoplasma salivarium
Pathway
msai03030
DNA replication
msai03410
Base excision repair
msai03420
Nucleotide excision repair
msai03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC10113_00990 (lig_2)
03410 Base excision repair
NCTC10113_00990 (lig_2)
03420 Nucleotide excision repair
NCTC10113_00990 (lig_2)
03430 Mismatch repair
NCTC10113_00990 (lig_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msai03032
]
NCTC10113_00990 (lig_2)
03400 DNA repair and recombination proteins [BR:
msai03400
]
NCTC10113_00990 (lig_2)
Enzymes [BR:
msai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC10113_00990 (lig_2)
DNA replication proteins [BR:
msai03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC10113_00990 (lig_2)
DNA repair and recombination proteins [BR:
msai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC10113_00990 (lig_2)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC10113_00990 (lig_2)
MMR (mismatch excision repair)
DNA ligase
NCTC10113_00990 (lig_2)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC10113_00990 (lig_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
BRCT_2
Nlig-Ia
RNA_ligase
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
CAD7360911
UniProt:
A0A7R9GPF8
LinkDB
All DBs
Position
1:47248..49248
Genome browser
AA seq
666 aa
AA seq
DB search
MTKEEIRNKVFELQKKISEWDNAYYNLDNPLVEDAVYDIEILKLIKLEQQYASYFTYEEL
KNSPTQRINASSLTQFEKVRHEIPMLSLNKAYSLSEISKFIDNIKKVANSFSFFVEPKID
GLSISLKYKNGKLIQAATRGDGLVGENVTENVMQIASIPKQISYLKDLEVRGEVYLPISQ
FLKLNKTLEKGKFNTFANPRNAAAGTLRQLDSAIVYERKLSAFLYYVVSPQEHNISTMEQ
AFDFLQKHNFPITNVFKVVNSIDEIQKFIDDFATEKLTLDYETDGIVIKLNELEFYNALG
QTQKFPHSAIAFKYEPNVAKTIIKDIFITIGRTGLVTYNAKLEPTELSGSLISFATLNNF
NYVRDLNLNINDMVYIKKAGEIIPCVIGLANQKNTIDYFKRIENCPYCNSKLIANETFLE
EYCENENCPEINRKKLIHFASKECMNFFSVGEKIINKFIELKLLYTPLDFYKLKDKIELL
VNLENFGHKSIMKMLTTIEESKNVSLDRVIFALSIKHIGTKVANFIASKVLELKNFLSFD
FASLINYNEIGEKITSSLIDWVSKDSNKDFVNKLLEIGINAKYVSNVKSKLFENKTFVIT
GTLSKPRTYFENLILENGGKVVNTVSQKTSYLLVGENPGSKLQKANSLKIEIINEQTFDD
ILKSDF
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaagaagaaattagaaataaagtatttgaattgcaaaagaaaattagcgaatga
gacaatgcttattataatttagacaatcccttggttgaagatgcagtttatgatattgaa
atcttaaaattaattaaattagaacaacaatatgcatcatattttacttatgaagaatta
aaaaactcaccaacgcaaagaattaatgcaagttctttaacccaatttgaaaaagttaga
catgaaattccaatgctttctttaaataaagcatattcgctttctgaaatatcaaaattt
attgataatattaaaaaagttgcaaatagcttttctttttttgttgaaccaaaaattgat
gggctttcaatttcattaaaatataagaatggaaaattaattcaagctgctacaagaggc
gatgggcttgttggcgaaaacgtcacagaaaatgttatgcaaattgcatcaattcccaaa
caaatttcatatttaaaagatttagaagttagaggcgaagtttatttacctatttcacaa
tttttaaaattaaataaaaccttagaaaaaggtaaatttaatacttttgcaaaccccaga
aatgcggcggctggaactttaagacaacttgattctgcaattgtttatgaaagaaaatta
tcagcatttttatattatgtagtttcgccacaagagcataatataagcactatggaacaa
gcatttgattttttgcaaaagcataattttcccattacaaatgtttttaaagttgttaat
tcaattgatgaaattcaaaaatttattgacgattttgctacagaaaaattaactcttgat
tatgaaaccgatggaattgttattaaattaaatgaattagaattttacaatgctttgggt
caaacacaaaaatttcctcattcagcaattgcttttaaatatgaacccaatgttgcaaaa
acaattattaaggatatttttattacaattggaagaacagggcttgttacttataatgca
aaattagaacccaccgaattatcaggaagtttgatttcatttgcaacattaaataatttt
aattatgttagagacttgaatttaaatataaatgacatggtttatattaaaaaagctggt
gaaattattccatgtgttatcggtcttgcaaatcaaaaaaatactattgattattttaaa
agaattgaaaattgtccatattgtaattcaaaattaatagctaatgaaacatttttggaa
gaatattgtgaaaatgaaaattgtcctgaaataaatagaaaaaaattaatacattttgct
tcaaaagaatgtatgaattttttctctgttggtgaaaaaattattaacaaatttattgaa
cttaaactgttatatactcctttggatttttataaattgaaagataaaatcgaattattg
gttaatttagaaaattttggtcataaatctatcatgaaaatgcttactacaattgaagaa
tctaaaaatgttagtttagatcgcgtgatttttgcattatcaattaaacacattggcacc
aaagtggcaaattttattgcttctaaagttttggaacttaaaaattttctttctttcgat
tttgcttcactaattaattacaatgaaattggcgaaaaaattactagttcattaattgat
tgagtttcaaaagatagtaataaagattttgttaataaattattagaaattggtattaat
gcaaaatatgtttcgaatgtcaaatctaaattatttgaaaataaaacattcgttatcaca
ggtactttatcaaaaccaagaacatatttcgaaaatttaattttagaaaatggcggtaaa
gttgttaatacagtttctcaaaaaacctcgtatttattagttggagaaaatcccggatca
aaattgcaaaaagccaattctctaaaaattgaaattattaatgaacaaacatttgatgat
attttaaaaagtgatttttaa
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