Mycobacterium saskatchewanense: MSAS_53110
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Entry
MSAS_53110 CDS
T07413
Symbol
ligA
Name
(GenBank) DNA ligase A
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
msak
Mycobacterium saskatchewanense
Pathway
msak03030
DNA replication
msak03410
Base excision repair
msak03420
Nucleotide excision repair
msak03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MSAS_53110 (ligA)
03410 Base excision repair
MSAS_53110 (ligA)
03420 Nucleotide excision repair
MSAS_53110 (ligA)
03430 Mismatch repair
MSAS_53110 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msak03032
]
MSAS_53110 (ligA)
03400 DNA repair and recombination proteins [BR:
msak03400
]
MSAS_53110 (ligA)
Enzymes [BR:
msak01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MSAS_53110 (ligA)
DNA replication proteins [BR:
msak03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MSAS_53110 (ligA)
DNA repair and recombination proteins [BR:
msak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MSAS_53110 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MSAS_53110 (ligA)
MMR (mismatch excision repair)
DNA ligase
MSAS_53110 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MSAS_53110 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
BBX66137
LinkDB
All DBs
Position
5605805..5607889
Genome browser
AA seq
694 aa
AA seq
DB search
MSPAEADEAPPEVRRHWQELAAEVREHQFRYYIKDAPIISDADFDTMFNELLALEDRYPE
LRAPDSPTQLVGGAGFATDFTSAEHLERMLSLDDVFDRDELAAWSIRVENEIGRDPDYLC
ELKIDGVALSLVYRDGRLERAATRGDGRVGEDVTLNARTIDDVPERLAASADFPVPGLLE
VRGEVFFMLADFEALNASLVEEGKAPFANPRNSAAGSLRQKNPAVTARRKLRMICHGIGR
TEGFAPKTLHEAYTALRSWGLPVAEETARVRGLAAVEDRVTYWGEHRYDVPHEIDGVVVK
VDDVALQRRLGTTSRAPRWAVAYKYPPQEAQTELLDIRVNVGRTGRVTPFAFMTPVKVAG
STVGLATLHNAAEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGTEREFVMPTSCPE
CGTPLAPAKEGDADIRCPNARSCPAQLRERVFHVAGRGALDIEGLGYEAAIALLKAGVIA
DEGDLFTLTEDDLLRTDLFRTKAGTLSANGKRLLANLDQAKAAPLWRVLVALSIRHVGPT
AARALATEFGSLDAIVSASTEELAAVEGVGPTIAAALAEWFTVDWHRAIVDKWRAAGVRM
ADERDTSVARTLEGLTVVVTGSLAGFSRDDAKEAIIARGGKAAGSVSKKTDYVVAGDSPG
SKYDKAIELGVPVLDEDGFRTLLEQGPPAAPAAE
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
gtgagccctgccgaagccgacgaggcaccgcccgaggtgcggcgccactggcaggaactg
gccgccgaagtccgcgagcaccagttccgctactacatcaaggacgcgccgatcatttcc
gacgccgacttcgacacgatgttcaacgaactgctcgcgctggaggaccgctacccggag
ctgcgggcgccggactccccgacgcaactggtcggcggcgcgggcttcgccaccgacttc
acctcggccgaacacctcgagcgcatgctcagcctcgacgacgtgttcgaccgcgacgag
ctcgccgcctggagcattcgggtcgagaacgagatcggccgtgaccccgattacctgtgc
gagctgaagatcgacggggtggccctgtcgctggtgtatcgcgacggccggctcgagcgc
gccgcgacccgcggtgacggccgcgtcggcgaagacgtcacgctcaacgcgcgcaccatc
gacgacgtgcccgaacggctcgcggccagtgctgacttcccggtccccgggctattggag
gtgcgcggcgaggtgttcttcatgctcgccgacttcgaggcgctgaacgccagcctcgtc
gaggaaggcaaggcgccgttcgccaatccccgcaacagcgccgccgggtcgctccgccag
aagaacccggccgtgaccgcccggcgcaagttgcggatgatctgccacggcatcggccgc
acggaaggcttcgcgccgaaaaccttgcacgaggcgtacacggcgctgcgctcgtggggg
ttgccggtggccgaggagaccgcccgggtgcgcggactggccgccgtcgaggaccgggtc
acgtactggggcgagcaccgctacgacgtcccgcacgaaatcgacggcgtcgtagtcaaa
gtcgacgacgtcgcgctgcagcgccggctggggacgacgtcgagggcgccgcggtgggcg
gtggcctacaagtacccgcctcaggaggcgcagacggagctgctggacatccgggtcaac
gtcggacgcaccgggcgggtcacgccgttcgcgttcatgacaccggtgaaggtcgccggg
tcgactgtcgggctcgccaccctgcataacgccgccgaggtcaagcgcaagggcgtgctg
atcggtgacaccgtggtgatccgcaaagccggcgacgtgatcccggaggtgctcggcccc
gtcgtcgacctgcgtgacggcaccgaacgcgaattcgtcatgcccacaagctgtcccgag
tgcggcaccccgttggccccggccaaggagggcgacgccgacatccgctgccccaacgcc
cggtcctgtccggcgcagctgcgggaacgggtatttcacgtcgccggccgcggggcgctg
gacatcgaggggctgggttatgaggccgccatcgcgctgctgaaggccggcgtgatcgcc
gacgagggcgacctgttcaccctcaccgaggacgacctgctgcgcaccgatctgttccgc
actaaggccggcacgctgtcggccaacggcaagcgcctgctggccaacctcgaccaggcc
aaggccgcgccgctgtggcgggtgctggtggccctgtcgatccgccacgtcggaccgacg
gccgcccgcgccctggcaacggagttcggcagcctcgacgccatcgtgtccgcgtccacc
gaggagctcgccgcggtggagggcgtcgggccgacgatcgccgccgcgctcgccgagtgg
ttcaccgtcgactggcaccgtgcgatcgtcgacaagtggcgggccgccggcgtgcggatg
gccgacgagcgcgacaccagcgtggcccgcacactggagggattgaccgtcgtcgtgacc
ggctcgctggccgggttctcccgcgacgacgccaaggaggcgatcatcgcccgcggcggc
aaggccgcgggctcggtgtcgaagaagacggactacgtcgtcgccggcgactcgccgggc
tcaaagtacgacaaggccatcgagttgggggtcccggtgctcgacgaggacgggttccgc
acgttgttggagcagggcccgccggccgctccggcggcggagtga
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integrated database retrieval system
