Mycobacteroides salmoniphilum: DSM43276_03134
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Entry
DSM43276_03134 CDS
T06041
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
msal
Mycobacteroides salmoniphilum
Pathway
msal03030
DNA replication
msal03410
Base excision repair
msal03420
Nucleotide excision repair
msal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DSM43276_03134 (ligA)
03410 Base excision repair
DSM43276_03134 (ligA)
03420 Nucleotide excision repair
DSM43276_03134 (ligA)
03430 Mismatch repair
DSM43276_03134 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msal03032
]
DSM43276_03134 (ligA)
03400 DNA repair and recombination proteins [BR:
msal03400
]
DSM43276_03134 (ligA)
Enzymes [BR:
msal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DSM43276_03134 (ligA)
DNA replication proteins [BR:
msal03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DSM43276_03134 (ligA)
DNA repair and recombination proteins [BR:
msal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DSM43276_03134 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DSM43276_03134 (ligA)
MMR (mismatch excision repair)
DNA ligase
DSM43276_03134 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DSM43276_03134 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
LemA
HHH_3
Motif
Other DBs
NCBI-ProteinID:
QCH24863
LinkDB
All DBs
Position
complement(3155161..3157218)
Genome browser
AA seq
685 aa
AA seq
DB search
MDPDIQRQWGELAEEVRGHQFRYYVKDAPVISDGQFDELLKRLTALEEQYPELRTADSPT
QLVGGAGFVTEFRSVDHLERMLSLDNAFSSEELAAWDARVRGDIGEEPEYLCELKIDGVA
LALVYENGVLVRGATRGDGRSGEDVTLNARTIEDVPERLTGSKEYPIPALLEVRGEVFFR
LEDFGVLNASLVEEGKPPFANPRNSAAGSLRQKNPAITARRRLRMICHGLGRVEGFTPTS
LHDAYLALGQWGLPVSTHTTKVRGIAKVQERVNYWAEHRHDVEHEIDGLVVKVDTVALQR
RLGSTSRAPRWAIAYKYPPEEATTELLDIRVSVGRTGRVTPFAYMTPVKVAGSTVSLATL
HNASEVKRKGVLIGDTVVIRKAGDVIPEVLGPVADLRNGSEREFVMPTTCPECGTTLAHE
KEGDADIRCPNSRSCPAQLRERVFHVAGRGAFDIEALGYEAAIALLSAGVIEDEGDLFSL
NADDLLRTDLFTTKNGSLSANGSRLLDNLDKAKQQQLWRVLVALSIRHVGPTAARALATE
FGELEAIEGASVEQLAAVEGVGTTIAAAVVDWFTVDWHRAIVDKWRAAGVRMADERDESI
PRNLEGLSIVVTGSLPGFSRDEAKEAIIARGGKSASSVSKKTAFVVVGDAPGSKYDKAVE
LGVTILDEDGFRALLADGPPEPPAS
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggatcccgacatccagcgccaatggggtgagctggccgaagaggtgcgcggccaccag
ttccgctactacgtcaaggacgcccccgtcatttctgatggccagttcgacgagctgctg
aagaggctgacggcgctggaagagcagtacccggagctgcgcactgcggattcgccgacg
cagctcgtgggtggggcgggtttcgtcaccgagttcagatcggtcgatcacctggagcga
atgctgagcctggacaacgcattcagttccgaggagctggcggcctgggacgcgcgggtt
cgcggagatatcggtgaagaacccgagtacctgtgtgagctgaagatcgacggtgtggca
ctcgcgttggtctacgagaacggcgtgctggtgcgcggggcaactcgtggggatggacgt
agcggtgaggacgtcaccctgaatgccaggaccattgaggatgtgccggaaaggcttacg
gggtcaaaggaatacccgatacctgcgctcttggaggtgcgtggcgaggtgtttttccgg
ctggaggacttcggggtgctcaatgcctcgctggtggaggagggtaagccgccgttcgcc
aacccgcgcaacagcgccgcgggcagcttgcgacagaagaacccggccatcaccgcccga
cgtcggctgcggatgatctgtcacgggcttggccgtgtcgagggcttcacgccgacgagc
ctgcatgatgcctatttggctttggggcagtggggattacccgtatccactcataccacc
aaggtgcggggcatcgcgaaggttcaggagcgcgtcaactactgggccgagcatcgtcac
gatgtggaacacgagatcgacggccttgtcgtgaaagttgacacggtggcgttgcagcgt
cgtctcggtagcacctcgcgtgcgccgcgctgggccatcgcgtacaagtatccgcctgaa
gaagcgacgaccgaactgctcgacatccgggtgagcgtgggccgtaccggtcgggtcacg
cccttcgcgtacatgaccccggtcaaggtggccgggtccaccgtgtccctggcgaccctg
cacaacgcctccgaggttaaacgcaagggcgtgctgatcggcgacaccgtggtgatccgc
aaggccggggacgtcatccccgaggtgctggggccggttgccgatctgcgcaacggatcc
gaacgcgaattcgtcatgcccacaacgtgtccggagtgtggcaccacgttggcccacgag
aaggaaggcgatgccgacatccgctgccccaactcgcgtagctgcccggcgcagctgcgt
gagcgggtcttccatgtggcggggcgtggcgccttcgatatcgaggcgctcggttatgag
gcggcgatcgcgctgctgtcggccggggtcatcgaggacgagggcgacctgttcagcctc
aatgccgatgacctgctgcgcaccgatctgttcacgaccaagaatgggtcgttgtccgcc
aacggaagccgactgctggacaacctggataaggcgaaacagcagcagctgtggcgtgtg
ttggtggcgctgtcgattcgccatgtaggcccgaccgcggcgcgcgccctggccaccgag
ttcggtgaattggaggccatcgagggtgcgtccgtcgaacaactggccgccgtggagggc
gtgggaaccacgatcgccgcggccgtggtggattggttcaccgtcgactggcatcgtgcc
atcgtcgacaagtggcgcgccgcgggagtgcggatggccgatgagcgcgatgagtccata
ccgcgcaatctggaaggcttgtcgatcgtcgtaaccggttcactcccagggttttcgcgt
gacgaggccaaggaggccatcatcgcccgcggtggcaagtccgcgagctcggtgtccaag
aagacggccttcgttgtcgtgggcgacgcgccgggatccaagtacgacaaggccgtcgag
ctgggagtgacgatcctcgacgaggacggcttccgggcgctgctggccgacgggccgcct
gagccaccagcgtcgtga
DBGET
integrated database retrieval system
