Micropterus salmoides (largemouth bass): 119889757 Help Entry 119889757         CDS       T07309                                  Symbol traf6 Name (RefSeq) TNF receptor-associated factor 6   KO K03175   TNF receptor-associated factor 6 [EC:2.3.2.27] Organism msam  Micropterus salmoides (largemouth bass) Pathway msam04010   MAPK signaling pathway msam04120   Ubiquitin mediated proteolysis msam04140   Autophagy - animal msam04144   Endocytosis msam04620   Toll-like receptor signaling pathway msam04621   NOD-like receptor signaling pathway msam04622   RIG-I-like receptor signaling pathway msam05132   Salmonella infection msam05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:msam00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     119889757 (traf6)  09130 Environmental Information Processing   09132 Signal transduction    04010 MAPK signaling pathway     119889757 (traf6)  09140 Cellular Processes   09141 Transport and catabolism    04144 Endocytosis     119889757 (traf6)    04140 Autophagy - animal     119889757 (traf6)  09150 Organismal Systems   09151 Immune system    04620 Toll-like receptor signaling pathway     119889757 (traf6)    04621 NOD-like receptor signaling pathway     119889757 (traf6)    04622 RIG-I-like receptor signaling pathway     119889757 (traf6)  09160 Human Diseases   09172 Infectious disease: viral    05168 Herpes simplex virus 1 infection     119889757 (traf6)   09171 Infectious disease: bacterial    05132 Salmonella infection     119889757 (traf6)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:msam04131]     119889757 (traf6)    04121 Ubiquitin system [BR:msam04121]     119889757 (traf6) Enzymes [BR:msam01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      119889757 (traf6) Membrane trafficking [BR:msam04131]  Endocytosis   Clathrin-mediated endocytosis    Ubiquitin E3 ligases     119889757 (traf6) Ubiquitin system [BR:msam04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     119889757 (traf6) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  TRAF-mep_MATH MATH_2 zf-TRAF zf-C3HC4 zf-C3HC4_2 zf-RING_2 zf-RING_UBOX zf-C3HC4_3 TRAF6_Z2 zf-C3HC4_4 zf-RING_5 TRAF3_RING U-box RING_XB3-XBAT31 zf-TRAF_2 zf-RING_11 Prok-RING_4 DUF7310 Motif Other DBs NCBI-GeneID:  119889757 NCBI-ProteinID:  XP_038556497 LinkDB All DBs Position Unknown AA seq 571 aa AA seqDB search MACFDSNKGSLEEDSYEGAVGGELSSCALAMLEKERESLLSPSESPGTFISSTSTSLQPA VPIQGYDVEFDPPLESKYECPICLMALRNAIQTPCGHRFCKNCIEKSIRDTGQKCPVDNE MLSEDQLFPDNFAKREILSLTVRCPNRGCAEKMELRHLENHLAHCQFATAPCPQCQQSVR KSHLEEHITVECQRRPVSCPDCVARFVYEEKELHEQQCPFANVKCLYCEMDLIRDQMESH CDTDCPKAPIACNFSTFGCKERMQRHDLAQHMQEFTQMHMRYLAEFLRGLSLNGTAPKSL WTLGPSVSSEDQGAAASVSPCSGPRGAVSCTSNCAPCQPTAEMQRLREMDGRLVKQDHQL RELIILKDTQAGQLAELRRRVSILEETVKELEAQQCHGIFIWRLKGFSVHLRNQEAGHPV VEHSPGFYTGRPGYKLCLRLHLQTPSAPRCSNYISLFVHTMQGVFDGQLTWPFQGTIRLA ILDQGPEGQHHIEVMETKPDLQAFQKPTIQRNPKGFGYVTFLHLQQLSQRAFVKDDTMLI RCEVTPRFDNMLHREGPTVQPRGPEASVSRD NT seq 1716 nt NT seq  +upstreamnt  +downstreamnt atggcttgctttgatagcaataagggcagtttggaggaggacagctatgaaggagctgtc ggtggagagctatctagctgtgcattggcaatgctggaaaaggaacgggaatccctactc agcccttcagagagccctggcacgttcatcagcagcacctccactagtcttcagcctgct gtccccatccagggctatgatgtggagtttgacccacccctagaaagtaaatatgagtgc cctatctgcctcatggctctgaggaatgccattcaaacaccctgtggtcaccgtttctgc aagaactgcattgagaagtccattcgtgatacagggcaaaagtgcccggtggacaatgaa atgctgtcagaagaccagttgtttccggataactttgccaaacgagagattctgtcacta actgttcgctgtccaaaccgtggctgtgctgagaaaatggagctccgacatttagagaat catttggcacattgtcagtttgccactgcaccttgcccacaatgccaacagtctgtgaga aagagccacctagaggagcacataactgttgagtgccaaaggagacctgtgtcatgtcca gattgtgtggcacgctttgtttatgaagagaaagagcttcatgaacagcagtgtcccttt gccaatgtaaagtgcctgtactgtgagatggatctcatcagagaccagatggaatctcat tgtgatacagattgcccaaaagcacccatcgcctgtaactttagtacctttggatgtaag gaaaggatgcagcgccacgacctggctcagcacatgcaggagttcacacagatgcatatg cgctacttagccgagttcctgcgtggccttagcctcaatggcaccgcacccaaatctctg tggactttggggccttctgtttcctctgaggatcaaggagctgcagcatcagtatcaccc tgtagtggacccagaggagctgtaagctgcaccagcaactgtgccccatgtcagcctacc gcagagatgcagaggctcagggagatggatggacgactggtaaagcaggatcaccagctg cgtgagctcattatcttaaaagacacacaggctggccagcttgcagagctcaggcgtaga gtgtcaatactggaggagacagtgaaggagctggaggcccagcagtgtcacggtatcttc atctggcgcctcaaaggtttctctgtccacctacggaaccaagaagcaggccacccagtg gttgagcacagccccggcttctacactggtcgtccaggctacaagctgtgtctgcgcctc cacctgcagacccctagtgccccgcgctgctccaactatatctccctctttgttcacacc atgcaaggagtttttgatgggcagctgacatggcccttccagggcaccattcgccttgcc attctagaccagggccctgagggtcagcaccacatcgaggtcatggagactaaaccagac ctgcaagccttccagaaacccacgatccagcgcaacccgaaaggattcggctacgtcacc tttctgcacctgcaacagctgagtcagagagcttttgttaaagatgatactatgcttata cgctgtgaggtgacaccacgttttgacaatatgcttcaccgtgagggaccaacagtgcag cctagaggaccagaggcctcagtttcgagggactaa

DBGET integrated database retrieval system