Micropterus salmoides (largemouth bass): 119895350
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Entry
119895350 CDS
T07309
Symbol
smg6
Name
(RefSeq) telomerase-binding protein EST1A isoform X1
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119895350 (smg6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msam03019
]
119895350 (smg6)
03032 DNA replication proteins [BR:
msam03032
]
119895350 (smg6)
Messenger RNA biogenesis [BR:
msam03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
119895350 (smg6)
mRNA cycle factors
Common to processing body (P body) and stress granule
119895350 (smg6)
DNA replication proteins [BR:
msam03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
119895350 (smg6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
Motif
Other DBs
NCBI-GeneID:
119895350
NCBI-ProteinID:
XP_038564337
LinkDB
All DBs
Position
Unknown
AA seq
1684 aa
AA seq
DB search
MANELDRVRISAAELRAQTSNSINISDCQKGERNRTGYMEEEHEHHVHKQQRRREGKRPD
QQRFQTVAGHVRRPHDSEEGESGQGDPLAADSHKHDQPSQSETKGVSEKVLERHGCTDGG
TITDKRDLDVMKGDCSNTPNCRKSSHLHAKTEASQAKGFVENDREHQEPSGAAKPTRKAR
KPDREFYQPGSRRNIQGKDCGVGRELDKPPPKKHEQKTESESQLSTGGKEGNKKAYTQKQ
GGKDKEVKGIQENLKLSKSSEPDRKQQNREVENPPLLSDASVEKITCKVEKLSVKEKSKL
GCEGQDVEELSCKRGETTERRGQGGGTKEEEEKVQKKREKGNRRRRGGEKEKERNPDSRR
GGDEVGGGGKSDRGKAEKGRDRRAAESDRDNKPVKTGETHQSKGRENRAESRKGDNNNNR
SRDTEKDANTQRNGERAIERSDRNKYNANVTTPTSKRYSKSDIRRSRNRTYSSSSASSVT
SLDGPGLRMDMESTKWSRLEPRHNNKGGIANSGEGRRSHLQSWTTNGESSTESLEGSEMS
DIAEDRGRRRRGGEEELSTERQREERNRSKGNKGGGRGILKVSLEQSGILSPSGVAQYHK
QGMVPRGRGGGILVLPARTEISNSPEVGQRLLFGGIRGGAACRSRGGRGGGMRRLWDPNN
PDQKPALTSTQSSQHSSLQQPIYLQTGTGYGQLHFLDTDDEVAGSPPVPQGEHFRSKQAA
AMAYYKFQNSDNPYSYPMSTSNPHNPGTTTSQRYPYPYHMGPYQMGPPNGIYPSPGVGQF
CGNYRGAGYSQPGAGGGLTYEEVEQQARGELGRLLRAADAQELQLSNLLSRDRVSADGLD
RMAQLRADLLGLYEQVILTDIEFSDSQSADQALWKNVFYQVIERFRQLLKDPTYDNAPHI
RNMLLTLLDEGTLFFDALLQKLQAVYQFKLEDYMDGMAIRARPLRKTVKYALISAQRCMI
CQGDIARYREQASDSANYGKARSWYLKAQQIAPKNGRPYNQLALLAVYTKRKLDAVYYYM
RSLAASNPILTAKESLMSLFEEAKRKTLFLKAEQLERRRRQEHEGGSRGPAVRGRGRGED
GARVEIWIRPSGQAANSSSQRGGSESSRDSEQDGELGSLSASDLNKRFILSFLHAHGKLF
TKVGMESFPGVASRVLQEFRTLLQHGPSLLGSTHLLQIITINMFTIHNAHNRGEEGEVRH
VLQEQSTALGIGMFALLVQRCTELLRDTPAEPVPVADGEERGKGEELEGMVRVSAFPLDL
RELLPSIKVWSDWMLGHPDLWNPPPCNIDCCPDVWQCLADLCNMLARVDHEEVPLYKADT
EESEGDEELTVLQLKEDKLLAGFVPLLAAPQEPCYTDRHTDMAIAADCKRVTVLKYFLEA
LCGQEEPLLAFKGGKYISVATSPPPSCSMDTRSRQDSLTEKEADDVIVEAESSLSASEEE
EDPEEAGESENDIRQLKARRHALTNKLAQQQKRRDKIQAVLQTGGQLELEVRPLFLVPDT
NGFIDHLGGLKKLLQCGTYIIVVPLIVITELDGLAKGQDNFGGGVGSGGRGTGSRGNYNV
TAAHVRAVQEKARLAVAFLEKGFEAREPYLRALTSRGNQLESIAFRSEDTSGQQGNNDDV
ILSCCLHYCKDKAKDFMPDQRNGTVKLQREVVLLTDDRNLRVKALTRNVPVRDIPAFLSW
AKVG
NT seq
5055 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacgagctggaccgagtgagaatctcagctgcggaactccgagctcaaacttcg
aattcaatcaatatttctgactgtcagaaaggcgagaggaatcgaactggatacatggaa
gaagaacatgagcatcacgtacacaagcagcaaaggaggcgggaaggaaagcgtccggat
cagcagcgcttccagacggtagctggacatgtacgccgtccccatgacagtgaggaagga
gaaagtggtcaaggtgatcccctggccgctgattcacataagcatgatcagccatcacag
agtgagacaaagggtgtctctgaaaaagttttagagagacatgggtgcacagacggtggg
acgattaccgacaaaagggacttagacgtgatgaaaggtgactgcagtaacactccgaac
tgtagaaagagcagccacttacatgctaaaacggaagcaagtcaagcaaaaggctttgtt
gaaaatgacagagaacaccaggaaccgtctggagctgctaagccgacaaggaaagcccgc
aaaccagacagagaattttatcaacctgggagccggaggaacattcagggaaaggactgt
ggagttggaagagagctggataagcctccccctaagaagcatgaacagaaaactgaatct
gaatcccagttaagtacagggggaaaagaggggaacaaaaaagcatatacacagaagcaa
ggtgggaaagataaagaagtaaaaggtatacaggaaaatttaaaactgtctaaatctagt
gagccagacagaaagcaacaaaaccgcgaggtggaaaatcctccattactctctgatgct
tcggtggagaaaattacttgcaaagtagaaaagctcagtgtgaaagaaaagagtaaattg
ggatgtgaaggccaagatgttgaagagttaagttgcaagagaggggaaacgactgaaagg
agaggccaagggggaggaacaaaagaggaggaagaaaaggtacagaagaagagggaaaag
ggaaatcgcagaagaagaggtggggagaaggaaaaagagaggaatccagattccagaaga
ggaggtgatgaagtcggtggtggaggaaagagcgaccgggggaaagctgagaagggtaga
gataggagagctgcagaatcagatagggataacaaaccagttaagacaggagagacacac
caaagcaaaggaagagagaatcgtgcagaaagcagaaaaggtgacaacaacaacaaccgg
tccagagatactgagaaagatgccaacacacaaagaaatggagagagggctattgaaaga
agcgatagaaacaaatacaatgcaaacgtcacaacaccgacctcaaaacgctattccaaa
tcagatattcggcgctcaaggaatcggacttacagcagtagctcagccagcagtgtgacc
agcctggatggtcctggactaagaatggatatggagagtaccaagtggtcccgcttggag
cctaggcacaataacaaaggggggattgctaatagtggagaaggacgaaggagtcattta
caaagctggacaaccaatggggaatcatcaacagaatcactggaagggagtgagatgagt
gacatagcagaagatagaggtaggagaagaagaggtggggaggaagagctcagtacagag
aggcagagggaagaaaggaacagatcaaagggaaacaagggtggaggtcggggaatccta
aaggtttctctagaacagtcaggtatcttgtcacctagtggggttgcacaatatcacaag
caaggcatggttcctcgtggcagaggtggaggtattttggtgcttcccgcccgtacagag
atctccaattcacctgaggttgggcaaaggcttctttttggtggaattaggggaggagca
gcttgcaggagtagagggggcagaggaggaggaatgagacgactctgggatccaaataac
ccagaccagaaacctgctcttaccagcacccaatcctcacagcattcatctcttcaacag
cctatatatcttcagacggggactggatatggacaacttcactttctggacacagatgat
gaggtagcaggcagtcctccagtcccgcagggtgagcactttcgatccaagcaggctgct
gccatggcctactacaaattccaaaactctgacaacccctacagttaccccatgtccacc
agcaaccctcataatcctggcaccaccacaagccagcgctatccatatccctatcatatg
gggccctaccaaatgggtcctcctaatggaatataccccagccctggtgtgggtcagttc
tgtgggaattaccggggagcaggttattcccagccaggtgcaggcggtggtttgacatat
gaagaggtggagcaacaagctagaggggagctggggaggttgctgagggctgcagatgca
caggagctccagctcagtaacctgctgtcgagggatagagtgagtgctgatggactggat
cgcatggcccagctcagagctgaccttttggggctatatgagcaggtcatcctgacagac
atcgagttctcagactctcagagcgcagatcaggctttgtggaagaacgtcttttaccag
gtcattgagcgcttccggcagttactcaaagaccccacctacgacaacgcacctcatatc
agaaacatgctgctcacgctacttgacgagggaacactattctttgatgcgctgcttcag
aagctgcaggcagtgtaccagttcaagttagaggattacatggatggcatggctatcagg
gctcggccattacgaaaaacggtaaagtatgcacttatcagtgctcagcgctgtatgatt
tgtcagggagatatagcacgttaccgggaacaagccagtgactcggccaactacggcaag
gctcgcagctggtacctgaaagcccaacagattgcccccaaaaatggacgaccatataac
cagctggccttgctggcagtctatacaaagcggaagttggatgctgtgtattattacatg
cgcagcttggcagcttccaaccccatcctgactgcaaaggaaagcctgatgagtctgttt
gaggaagccaagcgtaagactctgttcttgaaggcagagcagcttgagcgaaggaggaga
caggagcatgagggaggctccaggggtccagcagtaagaggaagaggaagaggggaagat
ggagcacgtgtggagatttggattcgccccagcggacaagcagcaaactcatcctcacag
agaggaggcagtgaatccagcagagactctgaacaggatggagagctgggcagtctcagc
gctagtgatctaaataagaggttcatcttgagtttcctgcatgcacatggaaagctcttc
actaaagtgggcatggaatccttcccaggagtggctagtcgtgtgttgcaggagttcagg
acgctgctccagcatggcccttccttactgggcagcacgcacttgctgcagatcattacc
atcaacatgttcaccattcacaatgctcacaaccgaggtgaagaaggagaagtgcggcac
gttttacaagagcaaagcactgccctgggtatcggcatgtttgcactgctggtgcagcgc
tgcacagagctgctcagggacactcctgcagaaccagtccccgtggcagatggagaggag
aggggtaaaggggaggagctggagggtatggtgagggtctctgccttcccattggacctt
agagaactactgccaagcatcaaggtctggtctgactggatgttaggtcatcccgacctg
tggaacccaccaccatgcaatatagattgctgccctgatgtctggcagtgccttgcagac
ctgtgtaatatgctggcacgcgtggaccatgaggaagtgccgctgtacaaagctgacact
gaagaaagcgagggagatgaggagttgactgtgctgcagttgaaggaggacaagcttctt
gctggctttgtaccactgctggctgcaccacaggagccctgttacacagacaggcacact
gacatggcaatagcagcagattgtaagagagtgacagtactcaagtactttctggaggct
ttgtgtggacaggaagagcctctgttggccttcaagggaggcaaatacatctctgtggca
acttctcctccacctagctgctcaatggatacaaggagcaggcaggattctctaacagag
aaagaggctgatgatgtcatagtcgaggcagagtcctctctctccgcatcagaagaggag
gaggatcccgaggaggcgggagagagtgagaatgacatcagacagctgaaggcgcgccgc
cacgccctcaccaacaaactggcacagcagcaaaagcgaagggataaaatacaggcggtg
ctgcagacaggcgggcagttggagctggaagtgaggcctctctttttggttccagatacc
aatggattcattgatcacttgggagggctgaagaaactccttcagtgtgggacatacata
atagttgtgccactcatcgtgattacagagttagacggcttggctaaaggccaggacaac
tttggtggcggagtggggtcaggagggcgcggcaccggcagtcgtggcaactataatgtt
actgcggcccatgtgcgggccgtgcaggagaaggcccggttggcagtggctttcctagaa
aaaggattcgaagccagggaaccgtacctcagagcactgacaagcagaggaaatcagcta
gagtctattgccttccgcagtgaagacacctctggacagcagggtaacaatgatgatgtg
attctgtcctgctgtctccactactgcaaagacaaggcaaaagatttcatgcccgatcag
agaaatgggacagtgaagctccagagggaggtggtactccttacagatgaccgtaacctg
cgcgtcaaagctttgacccgcaacgtcccagtccgagacatccctgctttcctcagctgg
gccaaagtgggctga
DBGET
integrated database retrieval system
