Micropterus salmoides (largemouth bass): 119905094
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Entry
119905094 CDS
T07309
Symbol
cacna1fa
Name
(RefSeq) voltage-dependent L-type calcium channel subunit alpha-1D
KO
K04853
voltage-dependent calcium channel L type alpha-1F
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam04010
MAPK signaling pathway
msam04020
Calcium signaling pathway
msam04260
Cardiac muscle contraction
msam04261
Adrenergic signaling in cardiomyocytes
msam04270
Vascular smooth muscle contraction
msam04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
119905094 (cacna1fa)
04020 Calcium signaling pathway
119905094 (cacna1fa)
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
119905094 (cacna1fa)
09153 Circulatory system
04260 Cardiac muscle contraction
119905094 (cacna1fa)
04261 Adrenergic signaling in cardiomyocytes
119905094 (cacna1fa)
04270 Vascular smooth muscle contraction
119905094 (cacna1fa)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
msam04040
]
119905094 (cacna1fa)
Ion channels [BR:
msam04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
119905094 (cacna1fa)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
CAC1F_C
GPHH
Ca_chan_IQ
PKD_channel
FAM176
Motif
Other DBs
NCBI-GeneID:
119905094
NCBI-ProteinID:
XP_038577748
LinkDB
All DBs
Position
Unknown
AA seq
2069 aa
AA seq
DB search
MDGAKKDALPGGDGGKSDTLGSTGSARKRGGGAKKAMQANKSALRAPRALCCLTLSNPIR
MAALALVEWKPFDIFILLAIFANCVAMGVTKPYPDDDSNATNHQLEQVEYVFLVIFTIET
FTKILAYGLVMHPSAYIRSGWNLLDFVIVIVGLFSVIAEAMTDHKPGEAHHAAGKPGGLD
VKALRAFRVLRPLRLVSGVPSLQIVLNSIMKAMVPLLHIGMLVMFVIIIYAIIGLELFIG
RMHKTCYFSGTDLMLEDDPSPCAFAGNGRFCGGNGTECRGKWEGPNGGITNFDNIFFAML
TVFQCITMEGWTDVLYWMNDAIGFEIPWVYFVSLVIFGSFFIINLVLGVLSGEFSKEREK
AVARGELQKAQESKQMEEDMIGYMDWLIEAEDVDEEGNKRAAIAKKKMMKKFGWYKHSED
GGESDSDDDIAYLDDDSGFCASLMAKMMANSFCDQLCQLNHTFRKNCRVAVKTTNFYWLV
LLLVFLNTVASASEHYGQPKWLTEMQERANKILLLLFTLEMLMKMYAFGLQIYFMALFNR
FDCFVVCGGILETLLVEMDVIPPIGISVLRCIRLLRIFKMTRHWAALSDLVNSLLNSMKA
ICSLLLLLFLFLIIFALLGMQLFGGKFNFDETQMKRSTFDSFPQALLTCFQILTGEDWNA
VMYDGIMAYGGPIFPNMVVCIYFVILFVCGNYILLNVFLAIAVDNLAGGGGKTKVEEKKE
EEEEWDEDEEKEDEDAGNEEDDWQENEELRAIEGLEGVAPLKPEFSGPKEKIVPIPDGSS
FFILGKKNCLRVACHNLIHHPYFTNFILIFIILSSISLAAEDPIKSHSFRNIVLGYADYV
FTSVFTVEIVLKMTVYGAFLHSGSFCRNAFNLLDLLVVSVSLTSFFLHSSAISVVKILRV
LRVLRPLRAINRAKGLKNVVQCVFVAIRTIGNILIVTTLLQFMFACIGVQLFKGRFYSCT
DEAKHTPVECRGTFVVYKDGDMNHPMVKERIWENSDFNFDNVLMGMLALFTVSTFEGWPQ
LLYRAVDANAINRGPIYNYRVEISIFFIIYIIIIAFFMMNIFVGFVIITFREQGEAEFKN
CELNKNQRQCVYYALKAQPIKIYIPKNPSQLKFWKIINSSQFEYIMFVLILGNTLTLAIQ
HYEQSKLFTSIMDILNMIFTVVFTIEMIIKLLALRAHHYFIDPWNSFDALIVVGSVLDIA
VSEFSGGGGHGEGKGESGKVSITFFRLFRVLRLVKLLSKGEGIRTLLWTFVKSLQALPYV
GLLIAMIFFIYAVIGMQTFGKVAIDDDTHINRNCNFQTFFMAVLVLFRCATGEQWQEIML
AALPGRRCDPESDTEPGEEFSCGSNLSYIYFISFFMLCAYLIINLFIAVIMDNFEYLTRD
WTVLGTHHLDEFKRVWSDYDPEATGRIKHIDVVTMLRRIQPPLGFGKLCPHRVACKRLVA
MNVPLHSDGTVTFNATLFALVRTSLKIKTEGPIDQQNEELKLIIKKLWKHTKPKLIDEVI
PPPRGDAVTCGKFYASFLIQDYFKKFRKRKERERKSKKKDKAASLQQGLRTLQDLAPEMR
LAMACDLEEEEGVDGEMTGDDIFDSEPGTSVNTTPASTPLPRIDTLVEQTTVIMEPESKT
ANWDVITEQVMGLQEHERPGSELVGISIVTEQPVRSEPLPIRWWISISELPPPPPPPPPP
PPPPPTQEIVGGGEVIVEEPLVAATAVVAEQVYSSEGDAAHLASVEGYVYPEAVSPVPTE
TVYNEHSLERASSIGEITYDTHDANGFVGNGYGGTNMNGESVAASPTPYSTSEYNGNGYT
GYDENGSVISANGNGSIMSGFNGNDSTVCGYNGNENGSAQFVRRRLLPSIPKGRKPAFNF
QCLRPQSSVDDQLPIPGNYRGNTSPSRSRLQTQHSLDSRPSSVSSMSSTSWVNTAAAGTT
PVPGMIPPSGRRGKLIYTPMILVDEATGTSQPLWSDGSASLPVGRRPGWYPGQTRTFTNT
RPPPVNQGFVDRGSADSLVESILISEGLGIYARDPKFVSFAKREIAEACHMSLDEMESTA
ADLIARGASQSISRFEDELADEMNCVISY
NT seq
6210 nt
NT seq
+upstream
nt +downstream
nt
atggacggggcaaagaaagatgccctccctgggggcgatggaggaaaatcagacaccctc
gggtcgactggctcggccagaaaaagaggagggggggccaagaaggcaatgcaggcaaac
aagtccgcgctcagggccccccgagccctctgctgcctcaccctcagcaaccccatccgc
atggcagcactggccctagtagagtggaagccctttgatattttcattctacttgccatc
tttgccaactgtgtggccatgggtgttaccaagccgtatcccgatgatgactccaatgct
accaatcaccaactggaacaagtggaatatgtcttccttgtcatcttcaccatcgagacc
ttcactaaaatccttgcctatggcttagtcatgcaccccagcgcctacatacgcagcgga
tggaacttgcttgatttcgttatcgtcattgtcgggttgttcagtgtaatagcagaggcc
atgacggatcataagccaggagaggcccatcatgcagctggaaaacctggaggcctggat
gtcaaagctctcagagcgttcagggtgttgcgaccccttcggcttgtatctggagtgcca
agtttgcaaatcgtgttaaactccatcatgaaagccatggtcccccttctgcacattggt
atgttggtcatgtttgtcatcatcatctacgctatcatcggcttggagcttttcatcggc
aggatgcacaagacgtgttactttagtggcacagatctcatgttggaagatgatccgtca
ccttgtgcatttgccgggaacgggcgcttttgcggggggaatgggactgagtgcaggggc
aaatgggaaggccccaacggcggcatcacaaacttcgacaacattttcttcgccatgctg
acagttttccagtgcatcactatggagggttggacagatgttctctactggatgaatgat
gccattggctttgagatcccatgggtttactttgtttctctggtcatctttggatccttt
ttcattatcaatcttgtattgggtgtgttgagcggagagttctccaaggaaagagaaaag
gccgtagcgcgtggtgagctgcagaaggctcaggagagcaagcagatggaggaggacatg
ataggttacatggactggctcatagaggccgaggatgtggatgaagaaggaaacaaacgt
gctgcaattgcaaagaaaaagatgatgaagaagttcggctggtacaaacacagtgaggac
ggtggagagtcagactcggacgatgatatcgcatacctcgatgatgacagtggcttctgt
gcttctctcatggcaaagatgatggccaatagcttctgtgaccagttgtgccagctgaat
catacattcaggaagaactgccgtgtggccgtcaagacaactaacttctactggttggtg
cttttgctggtgtttctcaacacagtggccagtgcttccgagcattacggacagccaaag
tggctcacggaaatgcaagagcgagccaacaagatcctactgctgctgttcactctggag
atgctgatgaagatgtacgcctttggcctgcagatctatttcatggcgctgttcaaccgc
tttgattgctttgtggtgtgcggcggcatccttgagacgctgctcgtagagatggatgtc
atcccgcccatcggcatctctgtgctgcgctgcatccgactgcttaggatattcaagatg
acacggcactgggcagctttgtctgacctggtcaactctctgctcaactctatgaaagct
atctgctcccttctgctcctgctcttcctcttcctcatcatcttcgccttgctaggcatg
cagttgtttggaggcaaatttaactttgatgagactcagatgaagagaagtacttttgac
tccttccctcaggctctgctcacttgtttccagatcctcactggagaggactggaacgct
gtaatgtatgacggtattatggcatatggagggccgatcttccccaacatggtggtgtgc
atttactttgtcattctctttgtctgtggtaactacattctgctcaatgtcttcttggct
atcgctgtggacaacttggccggaggcggaggaaagacgaaagttgaagagaaaaaggaa
gaagaagaagagtgggatgaggatgaagagaaagaggatgaagatgcagggaacgaagaa
gacgactggcaggaaaacgaggagctgagggccatcgagggactggagggagttgctcca
ttaaaacctgaattctcagggcccaaagagaagattgtcccaatccctgatggaagctct
ttcttcattcttggaaagaaaaactgtttgcgagttgcctgccacaacctcatccatcac
ccttacttcaccaacttcattctcatcttcatcatcctcagtagtatttccctggccgct
gaggatccaatcaaatcccactcattcaggaacatagtgcttggttatgctgattatgtt
ttcacttcagttttcacggtggaaatagtactaaagatgactgtctacggagcatttctg
cacagtggctccttctgcagaaatgctttcaaccttcttgacctgctggttgtcagtgtg
tcgctcacatctttctttttacattcgagtgcaatctccgtggtcaagattctccgagtg
ctgcgagtgctcaggcctcttcgagccattaacagagctaagggactaaagaatgtggtg
cagtgtgtgtttgtggcgatccgcaccatcggcaacatcttaattgtcacaacactcctt
cagttcatgtttgcatgtattggagtgcagctcttcaagggccgattctacagctgcaca
gacgaagccaaacacactcctgtggagtgcagggggacgtttgtggtttataaagacggg
gatatgaaccaccccatggtgaaagagaggatttgggaaaacagtgatttcaactttgac
aatgtgctgatgggcatgctagctttgttcactgtgtcaacatttgaaggctggccacag
ctcctttaccgggccgtggatgccaacgccataaaccgagggcccatttacaactaccga
gtagaaatctccatctttttcatcatctacatcatcatcattgccttcttcatgatgaac
atatttgtgggttttgtcatcatcacatttcgagagcaaggggaggctgaattcaaaaac
tgtgaactcaacaaaaatcaacgtcagtgtgtgtactacgcactgaaagctcaaccaata
aagatttacattcctaaaaacccatcacagctcaaattctggaaaataatcaactccagc
cagtttgaatacatcatgtttgtgctaattctggggaacaccctcactctggctattcag
cattacgagcagtctaaactgttcacctccatcatggacatcctcaacatgatcttcact
gtggttttcactatagagatgattatcaagttactggctctgcgggctcatcactatttc
attgatccgtggaattcatttgatgctttgattgttgtggggagcgtgttggatattgca
gtctctgagtttagcggaggaggcggccatggtgagggcaaaggagagagtggaaaagta
tccatcacgttcttccgtttatttcgagtcttgaggttggttaaactgctcagcaaagga
gagggcattcgaaccctcctctggacttttgtcaagtccctccaggccctgccttatgtt
ggtctgctcattgcgatgatctttttcatctatgctgtgattggcatgcagacatttggg
aaagttgccattgatgacgacacacatatcaacagaaactgcaacttccagactttcttc
atggctgttctggtgctcttcaggtgtgccactggagagcagtggcaggagatcatgttg
gcagctctgcccggtagacgctgtgacccagaatcggacactgagcctggcgaagagttc
tcctgcggtagcaacttgtcctacatctacttcatcagcttctttatgctctgtgcttac
ctgattatcaacttgttcattgccgtcatcatggacaactttgaatacttgacacgcgac
tggactgtgctcggtactcaccacctggacgagtttaagagagtttggtctgactacgat
ccagaggccaccggccgtataaagcacattgatgttgtcactatgctgcgcaggattcag
ccacctcttggttttggaaaattatgtcctcatcgtgttgcttgcaagagactggttgct
atgaacgtcccactgcactcagatgggacagtcaccttcaatgctactctgtttgctctc
gtgcgaacctcgctcaagatcaagactgaaggccccatcgaccagcaaaatgaagagctg
aagctgatcattaagaagctctggaagcacaccaagcccaagctaattgatgaagtgatt
cctccccctagaggggatgcggtgacttgtggaaagttttacgccagcttcttgattcag
gactattttaaaaagttccgcaagagaaaggagagggagaggaaatccaaaaagaaggac
aaggcggcttctctgcagcaaggactgcggacgctgcaggacctcgctccagagatgcgt
ctggcaatggcctgtgacctggaagaagaggagggtgtggatggagagatgacaggtgat
gatatattcgacagtgagcccggaacctcagtgaataccacgcccgccagcacaccattg
ccgcgcatagatacacttgtggagcagacaactgtgatcatggaacctgagtccaagaca
gccaactgggatgtgatcacagagcaggtcatgggcctgcaggagcatgagagaccagga
tcagagctggtaggcatcagcattgtaacagaacagcctgtgaggtccgaacccctgccc
attaggtggtggatttccatcagtgagttgcctcctcctcctcctcctcctcctcctcct
cctcctcctcctcctacccaagagatagtaggtggaggagaagttatagttgaagaacca
ctcgtggcagctacagctgtagtagctgagcaggtttatagcagtgaaggagatgctgca
catctagcatcagtagaagggtatgtgtatccagaagctgtctctcctgtaccaactgag
acagtctacaatgaacacagcctggaaagagctagcagcattggggagataacctatgat
actcatgatgccaatggctttgttgggaatggctatggtggcaccaacatgaatggagag
agtgttgctgcaagccccacaccctatagcacaagtgaatataatgggaacggatacaca
ggctacgatgaaaacggcagtgtcatcagcgccaatggtaatggaagtataatgagcggc
ttcaatggaaatgacagcaccgtctgtggttacaatgggaatgagaatggtagtgcacag
tttgtcaggagacggctacttccttccataccgaaaggtcgtaagcctgcctttaacttc
cagtgtctgaggccacagagcagtgtggacgaccagctgcctatcccagggaactaccgt
gggaacacatcaccatccagatcccgtctacagacccagcacagcctggactcccggccc
agcagcgtgtcctcgatgtcatccacatcctgggtgaacacagcagcagctggcaccact
cctgttccaggaatgattcccccctcgggacgcaggggtaaactcatctacacccctatg
atcctggtggatgaagccacaggcaccagccagccgctgtggagcgacggctctgctagc
ctccctgtaggacgccgtcctggctggtatcccggtcagacgaggaccttcaccaacaca
agaccaccaccggttaaccagggctttgtagacagaggcagtgcagacagtctggtcgag
tcgatcttgatctccgagggtctcggcatctacgccagggacccgaagtttgttagcttt
gccaagcgggagattgccgaagcctgccacatgagcctggacgagatggagagcactgct
gctgacctcatagctcgcggagccagtcagtcgatttctcgctttgaggatgaactggcc
gatgaaatgaattgtgtgatttcctactga
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integrated database retrieval system
