KEGG   Micropterus salmoides (largemouth bass): 119918136
Entry
119918136         CDS       T07309                                 
Symbol
apaf1
Name
(RefSeq) apoptotic protease-activating factor 1 isoform X1
  KO
K02084  apoptotic protease-activating factor
Organism
msam  Micropterus salmoides (largemouth bass)
Pathway
msam04115  p53 signaling pathway
msam04210  Apoptosis
msam05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:msam00001]
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    119918136 (apaf1)
   04115 p53 signaling pathway
    119918136 (apaf1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    119918136 (apaf1)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz APAF1_C Beta-prop_EML_2 WDR55 NB-ARC Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd EIF3I Beta-prop_CAF1B_HIR1 APAF-1-like_WHD Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_EML WDR90_beta-prop_4th Beta-prop_WDR75_1st CARD Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_RIG_2nd Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st Beta-prop_WDR19_1st Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_HPS5 Ge1_WD40 Beta-prop_NWD2_C RMC1_N Beta-prop_WDR35_TULP_N PEP5_VPS11_N CARD_2 WD40_like WD40_RFWD3 Beta-prop_VPS8 WDR54 AAA_22 AAA_16 NACHT
Other DBs
NCBI-GeneID: 119918136
NCBI-ProteinID: XP_038594615
LinkDB
Position
Unknown
AA seq 1312 aa
MALQERARSCLLRFRHRLEQDIKPSYLMDHMISDGVLTVDEEERINNKPTKKDQAVALLD
LLLRKDNRSYISFYNALVKETYNDLASLLHDDLPQTSPDAHKSSYVSFTPCGEEGQSWVF
SPVERMEVETVLSEGGVPQRPVVFVNRPELVNRVREKLYRLQKDPGWITVFGMAGSGKSV
LAAEAVRDRDLINECFPGGIHWLSIGQLDKPDLLVKIQSLCYRLEQSLDSQSLHRTPNSL
DEAKERLRFLMLRRYPRALLILDDIWDSTVLKAFDIHCRILLTTRNRSLADSVSGAKHEV
EVESGLDEKKGLEILALYTKTKLQGLPEEARSIVRECKGSPLVVSLIGALLKEKPNRWRY
YLGQLQQKQFKRIRKSSSYDYDALDQAMAASIEVLPDEHRELYKDFTVLEKDIKVPAKVL
SVLWDLEPEDVEDILGEFVNKSLLFMDSHNKPNLYYLHDLQLDFLVEQNRTQLESLHAKV
VHQYQQHYRDGPPTSGDEECLYWIRFLTYHMAKANLSQELYSLMFSLDWVSIKSKIMGPA
HLINDYVEFGPILDKENSEVRSQFQEFLSLNGHQLEQRPFPDVVQLALSQPHTSEVYRQA
LLQAQDRTSKGKLYFNWLNKSSVESLSRLVIHPHQGSIYSACFSHDGAKIATSGASKTVK
VFKSTSGENLAEIQAHDDEVLCCAFSPNDHLLATCSSDRKVKVWNLEQAMLLRVFDEHEE
QVNYCQFTNTARRLLLATCSNDKCLNAKLWNLNKPSSQNTLFGHFEPVNHCCFSPDDTYV
STSSNDGTVKLFQVSSANEWKTINVRDMFTESDEEVPVKCSTWTADGKRIICAARNAVLV
FDVETSDMLLEIRTNRLSTVQYCHACATSNLLAIAFSNYAVELWDLEANKKMADCSGHLS
WVQRVQFSPDGSQLLSCSYDQTVRLWETKKVHTTSAVCLKRDSDVLFNNEEIIVSAADNR
NRLQVRDGRTGSVLFQSEEKSSRIRCTCMCRQLSAVVLGQEDGTVKAAGLTASQVLRTVS
CRIRRLLTSFRGLVLAVGLCTGSVQVLEVPSGKLLASLLGHTKTVLHCQFSQNGQTLITS
SEDTTIRVWRWQSGECKVLQGHKEQVRCFSLLSSSPADTRLLSWSFDGTVKMWNIESGEK
LQDIEAHRETILSCHVSPDGCLFATTSADKTAKLWHCESWQCIRTLSGHQDCVRSCRFSW
DGRRLATGDDNGEIRLWSVKDGSLLKICSREGKDGMDSLHGGWVTDLHFSPDNSLLVSTG
GYIKWWDVEKGEALQTFYPRGTALKRIHVSSDFSTFVTIDSIGILYILQKVV
NT seq 3939 nt   +upstreamnt  +downstreamnt
atggcgttgcaggaacgagcgcggagctgtttgctgcgctttcgccacagactggagcag
gacatcaagccctcctacctgatggaccacatgatcagtgatggtgtgctgactgtggat
gaggaggagaggatcaataacaagcccaccaagaaggatcaggctgtggccctgttggat
ctgctgctgaggaaggacaaccgttcctacatctccttttacaacgccctggtcaaggag
acatacaatgatttggccagtctgcttcatgatgacctaccgcagacgtcacctgatgca
cataagagttcctatgttagcttcacaccctgtggtgaggaagggcagtcgtgggtgttt
tcaccagtggagagaatggaagtcgagacggtgctcagtgaaggtggggtaccacagagg
cccgttgtgtttgtcaacagaccagagcttgtgaaccgtgtcagggagaaactctaccgg
ctgcagaaggaccctggctggatcactgtctttggaatggctggctcgggcaaatccgtc
ctggctgctgaggctgtccgagaccgtgacctcattaatgagtgcttccccggaggcatt
cactggctgtccatcggccagctggacaaaccagacttgctggtgaagatccagtcattg
tgttatcgtctggaacagagcctggattcccagtccctccaccgcacgcccaactctctg
gatgaggccaaggagcgcctgcgcttcctcatgctgcgcagatatccgagagcgttgctg
attctagatgatatctgggacagtacagtgctgaaggcgttcgatatccactgtcggatt
cttttgaccaccagaaatagaagcctcgctgattctgttagtggtgctaaacatgaggtg
gaagtggagagtggtctggatgaaaaaaaggggctggagatcctcgctctgtacactaaa
actaaactccagggacttcctgaggaggctcgcagcattgtcagagaatgcaaaggttcc
cctctggttgtctccctgatcggggctctactcaaagagaaacctaaccgttggcgttac
tacctcggccagctgcagcagaagcagttcaagcgtataaggaagtcatcgtcttatgac
tacgacgccctcgaccaagccatggcggccagcattgaagtcctacctgatgaacatcga
gagctctacaaggactttactgtgctggagaaggacatcaaagtccctgcaaaggtgctg
tctgttctttgggacttggagccggaggatgtggaggacattcttggggagtttgtcaac
aagtctctgctttttatggacagtcacaataaacccaacctgtactacctccatgacctc
cagcttgacttcctggtggagcagaatcgcactcagcttgagagcctccacgctaaggtg
gttcatcagtaccagcagcactacagagatggtccccccacctctggagatgaggaatgt
ctctactggatcagattcctcacctaccacatggccaaagccaacctctcccaggagctc
tactccctcatgttttctctggactgggtcagcatcaagtccaagataatgggaccagct
cacctcatcaatgactatgtggagtttggacccattctggacaaagagaacagtgaagtg
cgtagtcaattccaagagtttctgtctctgaacggccaccagctggagcagcgtcctttc
cctgacgtggtgcagcttgctctgtctcagccacatacctccgaggtgtacagacaggct
ctgctgcaggcgcaggaccggaccagcaaagggaaactctacttcaactggctgaataag
agcagtgtagagagtctgtcccgtctggtgatccacccccaccagggctccatctactcc
gcctgcttctcccatgatggagccaagatcgccaccagtggagctagcaagacagtcaag
gtgtttaaaagcacctcaggtgagaatctcgcagagatccaggcccatgatgatgaggtg
ctctgctgtgccttctcccccaatgaccatctcctagcaacctgctccagtgacaggaaa
gtcaaggtgtggaacctggagcaagccatgctgttaagggtctttgacgagcatgaggag
caggtcaactactgtcagtttaccaacacagcacgacgcctcctgctggccacctgctcc
aacgacaaatgcttaaatgccaagttgtggaacctcaacaagccatcctcccagaacacc
ttgtttggccacttcgagccagtcaaccactgctgtttctcccctgatgacacctatgtg
tccacttcctctaatgatggtaccgttaagctgtttcaggtgtcgtctgccaatgagtgg
aagacaatcaatgtgagggacatgtttacagagagcgatgaagaggtccctgtcaagtgc
agcacctggactgctgacggcaaacgcatcatatgtgcagccaggaacgctgttctggtg
tttgacgtggagacatcggacatgttgttggagatcagaacaaatcgtctgagcacggtg
cagtactgtcacgcatgtgctaccagtaacctgctggctatcgcgttctccaactatgct
gtggagctatgggacttggaggccaataagaagatggctgactgcagtggtcacctgagt
tgggttcagcgtgtccagttctctcctgacggctcacagctgctctcctgctcttacgac
cagactgtcaggttatgggagactaagaaggtgcacaccacctcagctgtctgcctgaaa
agagactctgacgttctcttcaataatgaagaaatcatagtgtcagctgcagacaaccgc
aacagactgcaggtgcgtgatggcaggacaggatcagtgctgttccagtcggaggagaag
tcgtccaggatccggtgtacgtgtatgtgcaggcagctttctgctgtggtcctgggccag
gaagatgggactgtaaaggcagcagggctgacagctagtcaggtactgaggactgttagc
tgcaggatccgacgactgttgacatccttcagggggttggtgctggctgtagggctatgt
acaggcagcgtacaggtgttggaagtcccctctgggaagctcctagcctctctgctggga
cacaccaagacggtgctgcactgccagttcagccagaacggccaaacacttatcacgtcc
tccgaggacaccaccataagggtgtggaggtggcagtctggggagtgtaaagtactgcag
ggtcacaaggaacaggtcagatgcttctctctgctctccagctcaccggccgacacaaga
ctgctgtcctggtccttcgacggcactgtcaagatgtggaacatagaaagtggagagaag
ctgcaggacatcgaagctcatcgggaaaccattctatcctgtcatgtctcgccagatgga
tgcctcttcgccaccacctctgctgacaagactgctaagttgtggcactgcgagtcctgg
cagtgtatccgcacactgagcggccaccaagactgtgtccgaagctgccgattctcctgg
gacggccgacgcctcgcaacaggagatgacaatggagagattcggctctggagcgtcaag
gatggctctttgctgaagatttgttcccgggaaggtaaagacggtatggactcgctgcac
ggaggctgggtgaccgacctgcacttctcccccgacaactctcttctggtctcaactggc
ggttacatcaagtggtgggatgtggagaaaggcgaggccctgcagaccttctatccgagg
ggaaccgcgttgaaaaggatccacgtctcatccgacttctccaccttcgtcaccattgac
agcatcggcatcctctacatcctgcagaaggtggtgtga

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