Mycolicibacterium sarraceniae: MSAR_00290
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Entry
MSAR_00290 CDS
T07083
Symbol
ligA
Name
(GenBank) DNA ligase A
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
msar
Mycolicibacterium sarraceniae
Pathway
msar03030
DNA replication
msar03410
Base excision repair
msar03420
Nucleotide excision repair
msar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MSAR_00290 (ligA)
03410 Base excision repair
MSAR_00290 (ligA)
03420 Nucleotide excision repair
MSAR_00290 (ligA)
03430 Mismatch repair
MSAR_00290 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msar03032
]
MSAR_00290 (ligA)
03400 DNA repair and recombination proteins [BR:
msar03400
]
MSAR_00290 (ligA)
Enzymes [BR:
msar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MSAR_00290 (ligA)
DNA replication proteins [BR:
msar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MSAR_00290 (ligA)
DNA repair and recombination proteins [BR:
msar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MSAR_00290 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MSAR_00290 (ligA)
MMR (mismatch excision repair)
DNA ligase
MSAR_00290 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MSAR_00290 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Auto_anti-p27
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
BBY56893
UniProt:
A0A7I7SJE5
LinkDB
All DBs
Position
complement(17948..20065)
Genome browser
AA seq
705 aa
AA seq
DB search
MASETSDHATDPVDPDVRRRWQDLAEEVREHQFRYYIKDAPIIADADFDTLFNELLALEE
RYPELEVADSPTQLVGGAGFATDFAEAAHLERMLSLDDVFNTEELAAWSNRVEAEIGRDP
QYLCELKIDGVAIGLVYRDGRLERAATRGDGRVGEDVTNNARTIVDIPETLTASEEYPIP
AVLEVRGEVFFRLADFENLNAGLVEEGKAPFANPRNSAAGSLRQKNPAVTAKRRLRMICH
GLGYTEGFTPDTLHDTYFALKAWGLPVSERTTRVAGLAAVEEKITYWGERRHEIEHEIDG
IVVKVDDFAQQRRLGATSRTPRWAVAYKYPPEEAQTTLLDIKVNVGRTGRVTPYAVMTPV
KIAGSTVEMATLHNGSEVKRKGVWIGDTVMIRKAGDVIPEVLGPVIELRPDGAHEFEMPT
HCPECGTPLAPAKESDVDIRCPNSRSCPAQLRERVFHLAGRGGLDIEGLGYEAATALLNA
KVIGDEGDLFGLTSADLLTSDFFKTKDGALSANGARFLINLHQAKDRPLWRILVSLSIRH
VGPTAARALAVAFGSLDAIMAATEEQLADVEGVGPTIAAALIEWFDVDWHRAILDKWKAA
GVRMEDVRDPAIAPTLQGLSIVVTGSLPGFSRDEAKEAIITRGGKAVGSVSKKTSFVVAG
DAPGSKYDKAVELGVPILDEDGFRTLLEQGPPAPEESEEPEEAAD
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
gtggcttcagagacgtccgatcacgcgaccgaccccgtcgatccggatgtgcgccggcgc
tggcaggacctcgccgaagaggtgcgtgagcatcagttccggtactacatcaaggacgcg
ccgatcatcgccgacgccgacttcgacacgctgttcaatgagctgctcgcactcgaggag
cgctacccggaactagaggtcgccgactcgccgacccagctggtgggtggcgcgggcttc
gccaccgatttcgccgaggccgcccatctggagcggatgctgtcgctggacgacgtgttc
aacaccgaggaactggcggcctggtccaaccgggtggaggccgagatcggccgcgaccct
cagtacctctgcgagctcaagatcgacggggtggccatcggcctggtgtatcgggacggg
cggctggagcgcgcggccacccgcggcgacggccgggttggcgaggacgtcaccaacaac
gcccggaccatcgtcgatatccccgaaaccctcaccgcctcagaggaatacccgatacct
gcggttctcgaagtgcgcggggaggtgttcttccggctcgccgacttcgaaaacctcaat
gccgggctggtcgaagagggcaaggcgccgttcgccaacccgcgtaacagcgcggccggc
tcattgcggcagaagaatccagcggtcactgccaagcgccgcttgcggatgatctgccac
ggacttggctataccgaaggcttcaccccggatacgttgcacgacacctacttcgcgttg
aaggcctgggggctcccggtttccgagcgcaccacgcgggtggccggactggccgccgtc
gaggagaagatcacctactggggcgagcgccgccacgagatcgagcacgaaatcgacggc
atcgtcgtcaaagtcgatgacttcgcccagcagcgccgcctcggcgccacgtcgcgcacg
ccgcgctgggcggtcgcctacaagtacccccctgaggaagcccagaccacgctgctcgac
atcaaggtcaacgtcggccgcaccggccgggtcaccccgtacgcggtgatgacgccggtg
aagatcgccggatcgaccgtcgaaatggccacgctgcacaacggctcggaggtcaagcgc
aaaggtgtctggatcggcgacaccgtgatgatccgcaaggccggcgacgtcatccccgaa
gtgctcgggccggtcatcgaactgcggcctgatggcgcacatgaattcgaaatgccgacc
cattgcccggaatgcgggacaccgctggccccggccaaggaaagtgacgtcgacatccgt
tgcccgaactcgcggtcgtgccccgctcagttgcgcgagcgggtcttccacctggccggc
cgtggcggactggatatcgaagggctcggctacgaagcggcgacggcgctgctgaacgcc
aaggtcatcggcgacgagggcgatctgttcggcctcaccagcgccgacctgctgacgtcg
gacttcttcaagaccaaagacggtgccctgtcggccaacggcgcgcggttcctgatcaac
ctgcaccaggccaaggatcgccccttgtggcggattctggtgtcgctgtccatccggcat
gtcgggccgaccgccgcgcgcgcattggctgtcgcgttcggcagcctcgacgcgatcatg
gcggccaccgaggagcagctggccgatgtcgagggcgtcgggccgaccatcgccgccgcg
ctcatcgagtggttcgacgtggactggcaccgtgcgatcctcgacaagtggaaggccgcc
ggcgtgcggatggaagatgttcgcgacccggcgatagcgccgacgctgcagggactttcg
attgtggtgaccggctcgctgcccgggttctcccgcgacgaggccaaggaggccattatc
acccgcggcggtaaggcggtcggctcggtgtcgaagaagacctcattcgtggtggccggg
gatgcgccgggttcgaagtacgacaaggccgtcgagctgggtgtgccgatcctcgacgag
gacggcttccgcaccctgctggagcaggggccacccgcgcccgaagagtccgaggagccc
gaagaggcggcggactga
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